New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	681121 =	11 (0.060)	76 (0.400)	41/166	10.4	0.47	coding (2486/6438 nt)	RCAP_rcc00630	ice nucleation protein repeat family protein
	?	NC_014034	= 681528	163 (0.720)					coding (2079/6438 nt)	RCAP_rcc00630	ice nucleation protein repeat family protein
Rejected: Position hash score below cutoff.

GCTGACCTCGGCGCAGATGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGT...................................................................................................  <  NC_014034/681237‑681121 ....................................................................................................GGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGCGTCTGGGCTCGGCGCAGATCGGCGCGCTGACCAGCACGCAGATCGCGGCGCTCGAGGCGGCGGATCTGGCGCA  <  NC_014034/681528‑681430                                                                                                                                                                                                                                           TGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTG                                                                                                    <  2:3595655/101‑1 (MQ=1)                  TGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTG                                                                                                    <  1:2332736/101‑1 (MQ=1)                   GGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGG                                                                                                   <  1:4361313/101‑1 (MQ=1)                   GGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGG                                                                                                   >  1:4389270/1‑101 (MQ=1)                   GGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGG                                                                                                   >  2:2947196/1‑101 (MQ=1)                    GCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGC                                                                                                  >  1:1125774/1‑101 (MQ=1)                     CCGTGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCG                                                                                                 <  1:3997554/101‑1 (MQ=1)                     CCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCG                                                                                                 >  1:668269/1‑101 (MQ=1)                      CGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGC                                                                                                >  2:4431867/1‑101 (MQ=1)                      CGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGC                                                                                                >  2:3664115/1‑101 (MQ=1)                       GCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCT                                                                                               >  1:1485425/1‑101 (MQ=1)                       GCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCT                                                                                               <  2:2456589/101‑1 (MQ=1)                       GCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCT                                                                                               <  2:2523015/101‑1 (MQ=1)                        CGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTG                                                                                              <  2:2535232/101‑1 (MQ=1)                         GCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGA                                                                                             >  2:1827950/1‑101 (MQ=1)                         GCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGA                                                                                             >  1:1659381/1‑101 (MQ=1)                          CTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGAC                                                                                            <  1:3257642/101‑1 (MQ=1)                          CTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGAC                                                                                            <  1:3591720/101‑1 (MQ=1)                          CTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGAC                                                                                            <  1:2851909/101‑1 (MQ=1)                           TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                           >  2:1349224/1‑101 (MQ=1)                           TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                           <  2:2363738/101‑1 (MQ=1)                           TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                           >  1:80315/1‑101 (MQ=1)                           TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                           <  2:2691636/101‑1 (MQ=1)                           TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                           >  2:3021743/1‑101 (MQ=1)                           TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                           <  2:3252325/101‑1 (MQ=1)                           TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                           <  2:466137/101‑1 (MQ=1)                           TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                           >  2:987706/1‑101 (MQ=1)                           TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                           <  1:2604043/101‑1 (MQ=1)                           TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                           <  1:3563682/101‑1 (MQ=1)                           TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                           <  1:1068242/101‑1 (MQ=1)                            GAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGA                                                                                          >  2:2815130/1‑101 (MQ=1)                            GAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGA                                                                                          >  2:2916626/1‑101 (MQ=1)                             AGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGAC                                                                                         >  1:4306569/1‑101 (MQ=1)                              GCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACG                                                                                        <  1:906473/101‑1 (MQ=1)                              GCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACG                                                                                        <  2:2391040/101‑1 (MQ=1)                               CACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGG                                                                                       <  1:2299009/101‑1 (MQ=1)                                ACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGC                                                                                      <  2:3136335/101‑1 (MQ=1)                                ACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGC                                                                                      >  2:4178248/1‑101 (MQ=1)                                 CGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGTCAACGTGGCGCTGACGACGGCG                                                                                     <  1:3499414/101‑1 (MQ=0)                                  GACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGC                                                                                    <  2:3080092/101‑1 (MQ=1)                                  GACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGC                                                                                    <  1:1656611/101‑1 (MQ=1)                                  GACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGC                                                                                    >  1:2216150/1‑101 (MQ=1)                                  GACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGC                                                                                    >  1:2477200/1‑101 (MQ=1)                                   gCGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCA                                                                                   <  2:3884138/100‑1 (MQ=1)                                   ACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGac                                                                                   <  2:905471/101‑3 (MQ=1)                                    CGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAG                                                                                  <  2:3459068/101‑1 (MQ=1)                                    CGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAG                                                                                  >  1:823420/1‑101 (MQ=1)                                    CGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCCCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAG                                                                                  <  1:3731015/101‑1 (MQ=1)                                     GCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGG                                                                                 >  1:1600619/1‑101 (MQ=1)                                     GCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGG                                                                                 <  1:2004199/101‑1 (MQ=1)                                       AGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCG                                                                               >  2:952210/1‑101 (MQ=1)                                       AGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCG                                                                               >  2:4307830/1‑101 (MQ=1)                                       AGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCG                                                                               >  2:1788875/1‑101 (MQ=1)                                        GCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGG                                                                              >  2:6110/1‑101 (MQ=11)                                         CTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGC                                                                             <  2:1748395/101‑1 (MQ=31)                                         CTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGC                                                                             <  1:327957/101‑1 (MQ=31)                                          TTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCG                                                                            <  2:702997/101‑1 (MQ=32)                                          TTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCG                                                                            >  1:423745/1‑101 (MQ=32)                                           TGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGg                                                                           >  1:3566650/1‑100 (MQ=17)                                           TGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGGGGCGCTGACGACGGCGCAGGCGGCGg                                                                           <  2:2096282/101‑2 (MQ=17)                                             CGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcg                                                                         <  1:1430853/101‑4 (MQ=17)                                             CGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcg                                                                         >  2:2487173/1‑98 (MQ=17)                                              GGCGCTGAATACGGCCAGCGTGACTGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcgc                                                                        <  2:2644994/101‑5 (MQ=9)                                               GCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcgct                                                                       >  2:2110572/1‑96 (MQ=11)                                               GCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcgct                                                                       <  1:1471733/101‑6 (MQ=11)                                               GCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcgct                                                                       <  1:1448549/101‑6 (MQ=11)                                                CGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcgctg                                                                      <  2:2142897/101‑7 (MQ=0)                                                  CTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcgctggg                                                                    <  1:3454738/101‑9 (MQ=0)                                                   TGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGC                                                                   >  1:768638/1‑101 (MQ=0)                                                   TGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGC                                                                   <  1:1678932/101‑1 (MQ=0)                                                    GAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGCT                                                                  >  1:3836952/1‑101 (MQ=2)                                                    GAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGCT                                                                  >  1:3744462/1‑101 (MQ=2)                                                     AATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGCcc                                                                 >  1:3057317/1‑99 (MQ=0)                                                     AATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGCTC                                                                 <  1:4086333/101‑1 (MQ=255)                                                     AATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGCTC                                                                 <  1:1392560/101‑1 (MQ=255)                                                     AATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGCTC                                                                 <  1:3113137/101‑1 (MQ=255)                                                                                                                                                                                                                          GCTGACCTCGGCGCAGATGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGT...................................................................................................  <  NC_014034/681237‑681121 ....................................................................................................GGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGCGTCTGGGCTCGGCGCAGATCGGCGCGCTGACCAGCACGCAGATCGCGGCGCTCGAGGCGGCGGATCTGGCGCA  <  NC_014034/681528‑681430 Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG