New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	710494 =	226 (1.010)	13 (0.060)	8/198	30.0	0.06	coding (1169/3738 nt)	RCAP_rcc00645	diguanylate cyclase/phosphodiesterase
	?	NC_014034	= 1797124	173 (0.770)					coding (148/2238 nt)	RCAP_rcc01660	signal transduction histidine kinase
Rejected: Position hash score below cutoff.

AAAACGGCTGGCAGAGGCGGCCGAGGCGGCGCG.....................................................................................................  <  NC_014034/710526‑710494 ................................GTTCGAACTGCACCCAGGCGGCCCCGCGTATCCTCGGGGGTTTCCTCGGCATGGCGGATCAGCGCGCCGACGATGGTCAGAAGCTTCTCGGTCTGCCGCTCG  <  NC_014034/1797124‑1797024                                                                                                                                        AAAACGGCTGGCAGAGGCGGCCGAGGCGGCGCGTTCGAACTGCACCCAGGCGGCGCCGCG.ATCCTCGGGGGTTTCCTCGGCATGGCGGATCAGCGCGCCGA                                  <  1:4165651/101‑1 (MQ=255)                       atcGCGGCGCGTTCGAACTGCACCCAGGCGGCGCCGCG.ATCCTCGGGGGTTTCCTCGGCATGGCGGATCAGCGCGCCGACGATGGTCAGAAGCTTCTCGGT            >  1:2039398/4‑101 (MQ=255)                       atcGCGGCGCGTTCGAACTGCACCCAGGCGGCGCCGCG.ATCCTCGGGGGTTTCCTCGGCATGGCGGATCAGCGCGCCGACGATGGTCAGAAGCTTCTCGGT            >  2:1933326/4‑101 (MQ=255)                        tcGCGGCGCGTTCGAACTGCACCCAGGCGGCGCCGCG.ATCCTCGGGGGTTTCCTCGGCATGGCGGATCAGCGCGCCGACGATGGTCAGAAGCTTCTCGGTC           <  1:1864249/99‑1 (MQ=255)                        tcGCGGCGCGTTCGAACTGCACCCAGGCGGCGCCGCG.ATCCTCGGGGGTTTCCTCGGCATGGCGGATCAGCGCGCCGACGATGGTCAGAAGCTTCTCGGTC           <  2:436363/99‑1 (MQ=255)                          GCGGCGCGTTCGAACTGCACCCAGGCGGCGCCGCG.ATCCTCGGGGGTTTCCTCGGCATGGCGGATCAGCGCGCCGACGATGGTCAGAAGCTTCTCGGTCTG         <  1:3203572/101‑1 (MQ=255)                            GGCGCGTTCGAACTGCACCCAGGCGGCGCCGCG.ATCCTCGGGGGTTTCCTCGGCATGGCGGATCAGCGCGCCGACGATGGTCAGAAGCTTCTCGGTCTGCC       <  1:3434064/101‑1 (MQ=255)                             GCGCGTTCGAACTGCACCCAGGCGGCGCCGCG.ATCCTCGGGGGTTTCCTCGGCATGGCGGATCAGCGCGCCGACGATGGTCAGAAGCTTCTCGGTCTGCCG      >  2:2584494/1‑101 (MQ=255)                              CGCGTTCGAACTGCACCCAGGCGGCGCCGCG.ATCCTCGGGGGTTTCCTCGGCATGGCGGATCAGCGCGCCGACGATGGTCAGAAGCTTCTCGGTCTGCCGC     >  1:1933695/1‑101 (MQ=255)                               GCGTTCGAACTGCACCCAGGCGGCGCCGCG.ATCCTCGGGGGTTTCCTCGGCATGGCGGATCAGCGCGCCGACGATGGTCAGAAGCTTCTCGGTCTGCCGCT    >  1:2882763/1‑101 (MQ=255)                               GCGTTCGAACTGCACCCAGGCGGCGCCGCG.ATCCTCGGGGGTTTCCTCGGCATGGCGGATCAGCGCGCCGACGATGGTCAGAAGCTTCTCGGTCTGCCGCT    <  2:1041216/101‑1 (MQ=255)                               GCGTTCGAACTGCACCCAGGCGGCGCCGCG.ATCCTCGGGGGTTTCCTCGGCATGGCGGATCAGCGCGCCGACGATGGTCAGAAGCTTCTCGGTCTGCCGCT    <  2:1876516/101‑1 (MQ=255)                               GCGTTCGAACTGCACCCAGGCGGCGCCGCG.ATCCTCGGGGGTTTCCTCGGCATGGCGGATCAGCGCGCCGACGATGGTCAGAAGCTTCTCGGTCTGCCGCT    <  2:852471/101‑1 (MQ=255)                                                                                                                                        AAAACGGCTGGCAGAGGCGGCCGAGGCGGCGCG.....................................................................................................  <  NC_014034/710526‑710494 ................................GTTCGAACTGCACCCAGGCGGCCCCGCGTATCCTCGGGGGTTTCCTCGGCATGGCGGATCAGCGCGCCGACGATGGTCAGAAGCTTCTCGGTCTGCCGCTCG  <  NC_014034/1797124‑1797024 Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG