New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	788000 =	76 (0.350)	10 (0.050)	6/190	31.0	0.16	intergenic (+72/+64)	pntB/RCAP_rcc00717	pyridine nucleotide transhydrogenase subunit beta/hypothetical protein
	?	NC_014034	= 1699955	33 (0.150)					intergenic (+28/+15)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
Rejected: Position hash score below cutoff.

TGATCTCGCTCAAGCTGCTCTGGGACCTTCTTCCCTGAGCCCCCCTGTCACCTTGCGGCAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCGGGTCGCC....................................................................................................  <  NC_014034/788101‑788000 .................................................................................................TCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCAGCGAAACAG  <  NC_014034/1699955‑1699856                                                                                                                                                                                                                                                                                     ctCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGCAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCG                              <  2:1780047/99‑1 (MQ=1)                                                                            CGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAG                            <  2:2159443/101‑1 (MQ=1)                                                                             GGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGA                           <  1:576898/101‑1 (MQ=1)                                                                                       CCCCGGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTC                 <  1:3675731/101‑1 (MQ=1)                                                                                        CCCGGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCC                <  2:2663589/101‑1 (MQ=1)                                                                                          cgGGCGGGGCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCT              <  2:4333289/99‑1 (MQ=1)                                                                                             GCGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCA           <  2:1997626/101‑1 (MQ=1)                                                                                              CGGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCCCCcg          >  1:656376/1‑99 (MQ=1)                                                                                               GGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCCGC         >  1:3256440/1‑101 (MQ=1)                                                                                               GGGTCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCCGC         >  2:2646898/1‑101 (MQ=1)                                                                                                                                                                                                            TGATCTCGCTCAAGCTGCTCTGGGACCTTCTTCCCTGAGCCCCCCTGTCACCTTGCGGCAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCGGGTCGCC....................................................................................................  <  NC_014034/788101‑788000 .................................................................................................TCGCCTCGGCGCAGCCGAGGCGAAACTCTTCCCTCAACCGAAATCCGCAGGCTGGCGATGGCCGGTCAGTTGCGCCGAGATCGGCGGCTCCCTCCAGCGAAACAG  <  NC_014034/1699955‑1699856 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG