New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 836683 =237 (1.130)2 (0.010) 2/186 34.9 0.01 coding (172/1371 nt) hupT signal transduction histidine kinase HupT
?NC_014034 = 2967891 210 (0.930)coding (627/1308 nt) RCAP_rcc02781 FAD dependent oxidoreductase
Rejected: Position hash score below cutoff.

GAGGCCGAAGTGCCCAGCACCTCCCCCGCGCGCGAGACGACGATCAGCGCATCCGAAACCGAGGCGAAGATCGAACCGAGATAAGAGCGCAGGTCTTCGAGTTCGTG....................................................................................................  <  NC_014034/836789‑836683
....................................................................................................GTTCGTGAATCACCGCGCCCGCCGCCTCGGCCAGACGCGCCAGACCCAGACAGAGGTTCAACGGATGCACATGGCCCGCGCCGTGATCGAGATCGCCGCCCGTGTAG  <  NC_014034/2967891‑2967792
                                                                                                                                                                                                               
                               GCGAGACGACGATCAGCGCATCCGAAACCGAGGCGAAGATCGAACCGAGATAAGAGCGCAGGTCTTCGAGTTCGTGAATCACCGCGCCCGCCGCCTCGGCC                                                                             >  1:3118546/1‑101 (MQ=255)
                                               CGCATCCGAAACCGAGGCGAAGATCGAACCGAGATAAGAGCGCAGGTCTTCGAGTTCGTGAATCACCGCGCCCGCCGCCTCGGCCAGACGCGCCAGACCCA                                                             <  2:3118322/101‑1 (MQ=255)
                                                                                                                                                                                                               
GAGGCCGAAGTGCCCAGCACCTCCCCCGCGCGCGAGACGACGATCAGCGCATCCGAAACCGAGGCGAAGATCGAACCGAGATAAGAGCGCAGGTCTTCGAGTTCGTG....................................................................................................  <  NC_014034/836789‑836683
....................................................................................................GTTCGTGAATCACCGCGCCCGCCGCCTCGGCCAGACGCGCCAGACCCAGACAGAGGTTCAACGGATGCACATGGCCCGCGCCGTGATCGAGATCGCCGCCCGTGTAG  <  NC_014034/2967891‑2967792

Base quality scores:  ATCG  < 3 ≤  ATCG  < 27 ≤  ATCG  < 32 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG