New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 846990209 (1.000)2 (0.010) 2/184 34.7 0.01 coding (340/633 nt) hupD hydrogenase maturation protease HupD
?NC_014034 2769582 = 200 (0.880)coding (500/1341 nt) RCAP_rcc02581 sensor histidine kinase
Rejected: Position hash score below cutoff.

CGCTGGTCACGATGCGTGACGACGACGTGCCCGCCTTCATGGGCGCGAAAAAGATGAGCCTGCATCAGACCGGCTTTCAGGACGTCATCGCCACGGCGCAGCTGATGG....................................................................................................  >  NC_014034/846883‑846990
....................................................................................................GCTGATGGTCTTCGTCTCGGTGCTGATGACGCTGATCGCGTTTTTGTTTCTGCGCAACCAGTTGCGGCCGATCCAGCGGCTGGCCCGCGCCGCCGAGGCCTTCGGCAA  >  NC_014034/2769582‑2769681
                                                                                                                                                                                                                
                                GCCTTCATGGGCGCGAAAAAGATGAGCCTGCATCAGACCGGCTTTCAGGACGTCATCGCCACGGCGCAGCTGATGGTCTTCGTCTCGGTGCTGATGACGCT                                                                             >  1:589344/1‑101 (MQ=255)
                                 CCTTCATGGGCGCGAAAAAGATGAGCCTGCATCAGACCGGCTTTCAGGACGTCATCGCCACGGCGCAGCTGATGGTCTTCGTCTCGGTGCTGATGACGCTG                                                                            <  2:589276/101‑1 (MQ=255)
                                                                                                                                                                                                                
CGCTGGTCACGATGCGTGACGACGACGTGCCCGCCTTCATGGGCGCGAAAAAGATGAGCCTGCATCAGACCGGCTTTCAGGACGTCATCGCCACGGCGCAGCTGATGG....................................................................................................  >  NC_014034/846883‑846990
....................................................................................................GCTGATGGTCTTCGTCTCGGTGCTGATGACGCTGATCGCGTTTTTGTTTCTGCGCAACCAGTTGCGGCCGATCCAGCGGCTGGCCCGCGCCGCCGAGGCCTTCGGCAA  >  NC_014034/2769582‑2769681

Base quality scores:  ATCG  < 3 ≤  ATCG  < 33 ≤  ATCG  < 34 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG