New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 856201199 (0.960)2 (0.010) 2/184 34.7 0.01 coding (46/3066 nt) cheR1 chemotaxis protein methyltransferase CheR
?NC_014034 1605899 = 203 (0.900)coding (1082/1452 nt) murF UDP‑N‑acetylmuramoyl‑tripeptide‑‑D‑alanyl‑D‑ alanine ligase
Rejected: Position hash score below cutoff.

CAGAAAGCGCAGGCAAGCGGATCCGGCGAAGACGCAAGGGCAGGGCCCGGAAAGGAGCGATCATGATGGACGTTCCTGCGCCAGAGACGGACATGCAAGGCGGGCAGG....................................................................................................  >  NC_014034/856094‑856201
....................................................................................................CGGGCAGGTTCCGCGCGACGGGGTGGGGCGGGTCAAACGCGGCCGTCGGGTGGCCATTCTGGGCGACATGCTGGAGCTGGGCGCGGGGGAGGCGCGGCTTCATGCCGC  >  NC_014034/1605899‑1605998
                                                                                                                                                                                                                
                                        CAGGGCCCGGAAAGGAGCGATCATGATGGACGTTCCTGCGCCAGAGACGGACATGCAAGGCGGGCAGGTTCCGCGCGACGGGGTGGGGCGGGGCAAACGCG                                                                     >  1:4333932/1‑101 (MQ=255)
                                                                      CGTTCCTGCGCCAGAGACGGACATGCAAGGCGGGCAGGTTCCGCGCGACGGGGTGGGGCGGGTCAAACGCGGCCGTCGGGTGGCCATTCTGGGCGACATGC                                       <  2:4333663/101‑1 (MQ=255)
                                                                                                                                                                                                                
CAGAAAGCGCAGGCAAGCGGATCCGGCGAAGACGCAAGGGCAGGGCCCGGAAAGGAGCGATCATGATGGACGTTCCTGCGCCAGAGACGGACATGCAAGGCGGGCAGG....................................................................................................  >  NC_014034/856094‑856201
....................................................................................................CGGGCAGGTTCCGCGCGACGGGGTGGGGCGGGTCAAACGCGGCCGTCGGGTGGCCATTCTGGGCGACATGCTGGAGCTGGGCGCGGGGGAGGCGCGGCTTCATGCCGC  >  NC_014034/1605899‑1605998

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 40 ≤  ATCG