New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	158231 =	65 (0.290)	27 (0.120)	2/198	36.0	0.36	intergenic (+34/‑196)	parC/tuf1	DNA topoisomerase IV subunit A/translation elongation factor Tu
	?	NC_014034	1253896 =	30 (0.130)					intergenic (+54/+37)	RCAP_rcc01181/hisH	hypothetical protein/imidazole glycerol phosphate synthase subunit HisH
Rejected: Position hash score below cutoff.

GCAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCG  >  NC_014034/158133‑158327                                                                                                   |                                                                                                 gCAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCgggg                                                                                                <  2:1589798/101‑1 (MQ=255)  cAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCggggg                                                                                               <  1:4117725/101‑1 (MQ=255)      cGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTcc                                                                                           <  1:1441535/101‑1 (MQ=255)       gggCGAGCTCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCGGCCGCGCCCGACCCGCGGGGGCTCCg                                                                                          <  2:1512441/101‑1 (MQ=255)       gggCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTcct                                                                                          <  1:2834904/101‑2 (MQ=255)       gggCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCg                                                                                          <  1:3376142/101‑1 (MQ=255)       gggCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCCCCCGACCCCCggcgccctgc                                                                                          >  2:3819392/1‑93 (MQ=255)           gggcgcCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGcccc                                                                                      <  1:2033084/99‑1 (MQ=255)           gggcgcCGGGCGCATGGCGCCGCGCGGTTTCCCGCGCGACATCCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGcccc                                                                                      <  2:4181207/99‑1 (MQ=255)           gAGCGCCGGGCGGATGGCTCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGcccc                                                                                      <  2:484575/101‑1 (MQ=255)           gAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGcccc                                                                                      <  2:2184386/101‑1 (MQ=255)           gAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGcccc                                                                                      <  2:353666/101‑1 (MQ=255)            agggcCGGGCGGATGGCGACGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGccccc                                                                                     <  2:2653834/98‑1 (MQ=255)            aGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGccccc                                                                                     <  1:720864/101‑1 (MQ=255)            aGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGccccc                                                                                     <  1:2608649/101‑1 (MQ=255)             gcgcCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCg                                                                                    <  2:3805921/101‑1 (MQ=255)             gcgcCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCg                                                                                    <  2:3025028/101‑1 (MQ=255)             gcgcCGGGCGGATGGCGCCCCGCGATTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCg                                                                                    <  2:495442/101‑1 (MQ=255)              cgcCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGc                                                                                   <  2:2249550/101‑1 (MQ=255)               gcCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCa                                                                                  <  2:1139184/101‑1 (MQ=255)               gcCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCa                                                                                  <  1:4313415/101‑1 (MQ=255)               gcCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCa                                                                                  <  2:663020/101‑1 (MQ=255)                 cGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCAcc                                                                                <  1:955762/101‑1 (MQ=255)                    gCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCAccccc                                                                             <  1:3691672/101‑1 (MQ=255)                    gCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCAccccc                                                                             <  2:175079/101‑1 (MQ=255)                    gCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCAccccc                                                                             <  1:2741757/101‑1 (MQ=255)                    gCGGAGGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCAccccc                                                                             <  1:576453/101‑1 (MQ=255)                     cggcgggCGTCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCg                                                                            <  2:1679148/96‑1 (MQ=255)                         tGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGt                                                                        <  1:3362715/101‑1 (MQ=255)                          ggCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTa                                                                       <  2:3853540/101‑1 (MQ=255)                           gcgcCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAt                                                                      <  1:4085890/101‑1 (MQ=255)                            cgccgcGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAtt                                                                     <  2:2897878/101‑1 (MQ=255)                            cgccgcGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAtt                                                                     <  1:1976542/101‑1 (MQ=255)                              cgaggcgGTTTCGCGCGAAACAACCGGTTCCGCTGACGGGGTTGCGGGCGCTCCCGCCCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAtttt                                                                   <  1:1057569/97‑1 (MQ=25)                               cgcgcgGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTg                                                                  <  1:2991045/101‑1 (MQ=255)                                       ttCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGaa                                                          <  1:2491918/101‑1 (MQ=255)                                       ttCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGaa                                                          <  1:3942385/101‑1 (MQ=255)                                         cccGCCCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGaaaa                                                        <  2:125873/101‑1 (MQ=255)                                          ccGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAg                                                       <  1:2764256/101‑1 (MQ=255)                                            gcgcgACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCa                                                     <  2:172691/101‑1 (MQ=255)                                            gcgcgACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCa                                                     <  1:4377326/101‑1 (MQ=255)                                             cgcgACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCaa                                                    <  2:151094/101‑1 (MQ=255)                                               cgACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAgg                                                  <  1:2000441/101‑1 (MQ=255)                                                    aCCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGccc                                             <  2:1665133/101‑1 (MQ=255)                                                    aCCGGTCCACCTGAGGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGCGCCCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGccc                                             <  1:4423768/101‑1 (MQ=37)                                                      cGGTCCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGccccc                                           <  1:625271/101‑1 (MQ=255)                                                        gTTCCCCTGACGGGGTTTCGGGCGCTGCCGCTCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCg                                         <  1:1046618/101‑1 (MQ=255)                                                        gTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCg                                         <  2:1914900/101‑1 (MQ=255)                                                         ttCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCgg                                        <  1:3835057/101‑1 (MQ=255)                                                            cccTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACg                                     <  1:1545111/101‑1 (MQ=255)                                                               tGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACgtgt                                  <  2:2169496/101‑1 (MQ=255)                                                                 aCGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCg                                <  1:2692984/101‑1 (MQ=255)                                                                   ggggTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGtt                              <  2:1710604/101‑1 (MQ=255)                                                                     ggTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTc                            <  1:4347960/101‑1 (MQ=255)                                                                     ggTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTc                            <  2:3917462/101‑1 (MQ=255)                                                                       tttCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCgg                          <  1:1790807/101‑1 (MQ=255)                                                                       tttCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCgg                          <  1:918412/101‑1 (MQ=255)                                                                       tttCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCgg                          <  1:1283717/101‑1 (MQ=255)                                                                          cGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGa                       <  1:3929033/101‑1 (MQ=255)                                                                              cgcTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGAcgcg                   <  2:3913439/101‑1 (MQ=255)                                                                                       ccccGGCCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCt          <  2:4143109/100‑1 (MQ=255)                                                                                          cgccccGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGc       <  1:872604/98‑1 (MQ=255)                                                                                             cccGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAgg    <  1:3639902/101‑1 (MQ=255)                                                                                              ccGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAggc   <  1:1600302/101‑1 (MQ=255)                                                                                               cgcgGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAggcg  <  1:3695260/101‑1 (MQ=255)                                                                                               cgcgGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAggcg  <  1:1232443/101‑1 (MQ=255)                                                                                                   |                                                                                                 GCAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCG  >  NC_014034/158133‑158327 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 38 ≤  ATCG