BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396903 =	170 (1.140)	51 (0.340)	6/132	24.4	0.24	coding (785/1578 nt)	RCAP_rcc01307	hypothetical protein
*	?	NC_014034	= 1397936	150 (0.660)	51 (0.340)	6/132	24.4	0.24	intergenic (+240/+1658)	RCAP_rcc01307/RCAP_rcc01309	hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

Only 100 of 307 total aligned reads displayed.


CGTGTGGATGATCATGCAGCGCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATC  >  NC_014034/1396803‑1397003


cGTGTGGATGATCATGCAGCGCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACg                                                                                                                  >  1:1681595/1‑101 (MQ=255)


 gtgtGGATGATCATGCAGCGCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGt                                                                                                                 <  1:900951/101‑1 (MQ=255)


  tgtgGATGATCATGCAGCGCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTc                                                                                                                <  2:4309859/101‑1 (MQ=255)


  tgtgGATGATCATGCAGCGCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTc                                                                                                                <  2:353603/101‑1 (MQ=255)


     ggATGATCATGCAGCGCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCt                                                                                                             >  2:4098916/1‑101 (MQ=255)


     ggATGATCATGCAGCGCGGACGGCTTGGGTCGCGCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCt                                                                                                             <  1:4427145/101‑1 (MQ=255)


      gatgatCATGCAGCGCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTc                                                                                                            >  1:2701200/1‑101 (MQ=255)


       atgatCATGCAGCGCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTcc                                                                                                           >  1:4405722/1‑101 (MQ=255)


        tgatCATGCAGCGCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGGCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTccc                                                                                                          >  2:1537094/1‑101 (MQ=255)


          atCATGCAGCGCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTccccc                                                                                                        >  1:1962054/1‑101 (MQ=255)


          atCATGCAGCGCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTccccc                                                                                                        >  1:2408720/1‑101 (MQ=255)


            cATGCAGCGCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCcg                                                                                                      >  1:4146390/1‑101 (MQ=255)


            cATGCAGCGCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCcg                                                                                                      >  2:1880476/1‑101 (MQ=255)


             aTGCAGCGCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCcgc                                                                                                     <  2:265181/101‑1 (MQ=255)


                cAGCGCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCggg                                                                                                  <  1:4093366/101‑1 (MQ=255)


                cAGCGCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCggg                                                                                                  >  2:2705037/1‑101 (MQ=255)


                cAGCGCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCggg                                                                                                  >  2:4399180/1‑101 (MQ=255)


                      ggACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTg                                                                                            >  2:4255641/1‑101 (MQ=255)


                      ggACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTg                                                                                            >  1:3300985/1‑101 (MQ=255)


                            cTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGa                                                                                      >  1:1903745/1‑101 (MQ=255)


                            cTTGGGACGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGa                                                                                      <  1:1000500/101‑1 (MQ=255)


                             ttGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGaa                                                                                     >  2:2015009/1‑101 (MQ=255)


                              tGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGaaa                                                                                    <  1:4387289/101‑1 (MQ=255)


                               gggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                                                                   <  1:3108905/101‑1 (MQ=255)


                               gggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                                                                   >  1:2092964/1‑101 (MQ=255)


                                    ccTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCt                                                                             <  2:1796631/100‑1 (MQ=255)


                                     cTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.g                                                                           <  1:4278828/101‑1 (MQ=255)


                                     cTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.g                                                                           <  2:672676/101‑1 (MQ=255)


                                      tCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.gc                                                                          <  1:1747079/101‑1 (MQ=255)


                                      tCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGCGGATCGAAACA.GCCT.gc                                                                          >  1:2168407/1‑101 (MQ=255)


                                         ccccGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.Gcgcg                                                                       >  1:3510114/1‑101 (MQ=255)


                                          cccGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCg.g                                                                     <  2:817589/101‑1 (MQ=255)


                                              cgGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGc                                                                >  1:2595193/1‑101 (MQ=255)


                                                ggggCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.t                                                             <  2:77436/101‑1 (MQ=255)


                                                 gggCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.Tc                                                            <  1:1382542/101‑1 (MQ=255)


                                                 gggCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.Tc                                                            <  2:314363/101‑1 (MQ=255)


                                                  ggCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCg                                                           <  2:1681484/101‑1 (MQ=255)


                                                        gATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.Tc.c                                                   <  2:2950353/101‑1 (MQ=255)


                                                          tCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.c                                                >  1:2776605/1‑101 (MQ=255)


                                                           cGAAACCGGTCCAGAGATAGCCCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.c.c                                              <  1:3064231/101‑1 (MQ=255)


                                                            gAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.Ct                                             <  1:1473242/101‑1 (MQ=255)


                                                             aaaCCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.c.ccc                                            >  1:1561340/1‑99 (MQ=255)


                                                             aaaCCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTg                                            <  1:356058/101‑1 (MQ=255)


                                                             aaaCCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTg                                            >  2:1212239/1‑101 (MQ=255)


                                                              aaCCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..c                                         <  2:195434/101‑1 (MQ=255)


                                                               aCCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..Cg                                        <  2:3943762/101‑1 (MQ=255)


                                                                 cGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTg                                      <  1:2962214/101‑1 (MQ=255)


                                                                    tCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTc                                  <  1:3273787/101‑1 (MQ=255)


                                                                      cAGAGATAGGCCGCGCGGCCCTCCTCAGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGc                                <  1:2306858/101‑1 (MQ=255)


                                                                       agagATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCt                               >  2:4057899/1‑101 (MQ=255)


                                                                       agagATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCt                               >  2:588571/1‑101 (MQ=255)


                                                                       agagATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCt                               <  1:1781672/101‑1 (MQ=255)


                                                                         agaTAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCTcc                             >  1:4059258/1‑101 (MQ=255)


                                                                           aTAGACCGCGCGGCCCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCTcccc                           <  1:988952/101‑1 (MQ=255)


                                                                            tAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCTccccc                          <  1:1212332/101‑1 (MQ=255)


                                                                            tAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCTccccc                          >  2:907771/1‑101 (MQ=255)


                                                                             aGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCTcccccc                         >  2:3519874/1‑101 (MQ=255)


                                                                              gACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCTCCCCCcg                        <  2:244993/101‑1 (MQ=255)


                                                                               aCCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCCAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTGGCTGCCCCcgc                       >  1:247800/1‑101 (MQ=255)


                                                                                ccGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCTCCCCCcgcg                      >  2:1613305/1‑101 (MQ=255)


                                                                                      ggACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCg                <  2:54571/101‑1 (MQ=255)


                                                                                         ctcgcggttgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCG.GC.AGTG.TCAGGT.T..TT.C.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTg              <  2:2174672/91‑1 (MQ=0)


                                                                                          ggtcaacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GCTG.GCGCGCGC.CGCG.CCGGATCTT.TG.T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTgg             >  2:965625/11‑101 (MQ=9)


                                                                                          ggtcaacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GCTG.GCGCGCGC.CGCG.CCGGATCTT.TG.T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTgg             <  2:3592324/91‑1 (MQ=9)


                                                                                          ctcctcAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGa            <  1:1580185/101‑1 (MQ=255)


                                                                                          attggccccggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..ACT.GACC...C.GGCA.ACGGCC.TA.TG.CGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGa            >  1:2879910/11‑101 (MQ=0)


                                                                                          attggccccggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..ACT.GACC...C.GGCA.ACGGCC.TA.TG.CGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGa            >  2:2386524/11‑101 (MQ=0)


                                                                                           ttggccccggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..ACT.GACC...C.GGCA.ACGGCC.TA.TG.CGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGAt           <  2:3119270/92‑1 (MQ=2)


                                                                                           tcctcAGACGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGAt           <  1:4221095/101‑1 (MQ=255)


                                                                                           gtcaacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GCTG.GCGCGCGC.CGCG.CCGGATCTT.TG.T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGa            >  1:3687396/10‑101 (MQ=9)


                                                                                           cgcggttgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCG.GC.AGTG.TCAGGT.T..TT.C.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGGGGa            >  1:657/9‑101 (MQ=0)


                                                                                            tcaacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GCTG.GCGCGCGC.CGCG.CCGGATCTT.TG.T.CTT..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGAt           <  1:3971736/93‑1 (MQ=2)


                                                                                            tcaacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GCTG.GCGCGCGC.CGCG.CCGGATCTT.TG.T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGAt           <  1:3612837/93‑1 (MQ=9)


                                                                                            cctcAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATc          >  2:2124760/1‑101 (MQ=255)


                                                                                            cctcAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATc          <  2:3292226/101‑1 (MQ=255)


                                                                                            acccgcccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GCGT.GCGCG.CCATGAATTCATCG.AG.CG.C.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTgg             <  1:550935/94‑1 (MQ=0)


                                                                                            acccgcccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GCGT.GCGCG.CCATGAATTCATCG.AG.CG.C.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTgg             <  1:457664/94‑1 (MQ=0)


                                                                                             ggccccggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..ACT.GACC...C.GGCA.ACGGCC.TA.TG.CGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCg         <  1:2994627/94‑1 (MQ=2)


                                                                                             ctcAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCg         >  1:2826252/1‑101 (MQ=255)


                                                                                             caacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GCTG.GCGCGCGC.CGCG.CCGGATCTT.TG.T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATc          >  1:3953331/8‑101 (MQ=9)


                                                                                             caacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GCTG.GCGCGCGC.CGCG.CCGGATCTT.TG.T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATc          >  1:3158801/8‑101 (MQ=9)


                                                                                              tcAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGa        >  1:938767/1‑101 (MQ=255)


                                                                                              gccccggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..ACT.GACC...C.GGCA.ACGGCC.TA.TG.CGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGa        >  2:3813060/7‑101 (MQ=2)


                                                                                              ccggtggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.CCCG.GCGCC.GC.AGCG.AGTGCG.TCTGG.A.ACA..GGAG.GTCGCTCCCCCCGCGGGGGCGGGGATCg         >  1:1340570/7‑101 (MQ=2)


                                                                                              aacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GCTG.GCGCGCGC.CGCG.CCGGATCTT.TG.T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCATGGATCg         <  1:3871980/95‑1 (MQ=9)


                                                                                               cAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGaa       >  2:1743761/1‑101 (MQ=255)


                                                                                                ttgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCG.GC.AGTG.TCAGGT.T..TT.C.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGaa       <  2:1482145/98‑1 (MQ=2)


                                                                                                aGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGACCGaaa      >  2:1370923/1‑101 (MQ=255)


                                                                                                 tgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCG.GC.AGTG.TCAGGT.T..TT.C.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGGGGGTCGaaa      >  2:3763312/3‑101 (MQ=2)


                                                                                                 cccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GCGT.GCGCG.CCATGAATTCATCG.AG.CG.C.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGa        <  2:228415/99‑1 (MQ=2)


                                                                                                 actgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GCTG.GCGCGCGC.CGCG.CCGGATCTT.TG.T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGaaa      >  1:3389337/4‑101 (MQ=9)


                                                                                                  ctgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GCTG.GCGCGCGC.CGCG.CCGGATCTT.TG.T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc     >  1:1853269/3‑101 (MQ=9)


                                                                                                  ctgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GCTG.GCGCGCGC.CGCG.CCGGATCTT.TG.T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc     >  1:1045160/3‑101 (MQ=9)


                                                                                                  cggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.ACTG.ACCCG.GC...AA.CGGGCTATG.CG.C.TGGA.CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAct    <  1:3763901/99‑2 (MQ=2)


                                                                                                  cggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..ACT.GACC...C.GGCA.ACGGCC.TA.TGAG.CTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAct    <  1:835095/99‑2 (MQ=2)


                                                                                                  aCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACa    >  2:2773836/1‑101 (MQ=255)


                                                                                                   tgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GCTG.GCGCGCGC.CGCG.CCGGATCTT.TG.T.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAct    >  2:2499445/2‑100 (MQ=9)


                                                                                                   ggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..ACT.GACC...C.GGCA.ACGGCC.TA.TG.CGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGCAActa   >  2:3437707/2‑99 (MQ=2)


                                                                                                    gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCG.GC.AGTG.TCAGGT.T..TT.C.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAccc   >  1:1079833/1‑99 (MQ=2)


                                                                                                    gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.ACCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATc  <  1:3795696/101‑1 (MQ=255)


CGTGTGGATGATCATGCAGCGCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GCCT.GCGCG.GC.CGCA.TCGGCT.TC.CG.C.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATC  >  NC_014034/1396803‑1397003

Base quality scores:


ATCG

< 3 ≤


ATCG

< 19 ≤


ATCG

< 26 ≤


ATCG

< 33 ≤


ATCG

< 39 ≤


ATCG