New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	510048 =	60 (0.280)	10 (0.050)	9/190	28.5	0.18	intergenic (+35/+152)	RCAP_rcc00475/RCAP_rcc00476	acyl‑CoA dehydrogenase domain‑containing protein/hypothetical protein
	?	NC_014034	= 1699955	33 (0.150)					intergenic (+28/+15)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
Rejected: Position hash score below cutoff.

CTGCATCTGGCGCGGATCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGACCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTATTTGAGCCAAGAAAAAGCCGACAGGCGCTTTTGAGGTTCGGAAATTGAAA  >  NC_014034/509948‑510147                                                                                                        |                                                                                                           cTGCATCTGGCGCGGATAGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGTCC.ggg                                                                                                            >  2:3410777/1‑101 (MQ=255)  tGCATCTGGCGCGGATCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.ggg.g                                                                                                          <  2:1092919/101‑1 (MQ=255)  tGCATCTGGCGCGGATCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.ggg.g                                                                                                          >  1:3589750/1‑101 (MQ=255)   gCATCTGGCGCGGATCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGT.G.c                                                                                                        <  1:2562954/101‑1 (MQ=255)   gCATCTGGCGCGGATCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.c                                                                                                        <  2:4312995/101‑1 (MQ=255)   gCATCTGGCGCGGATCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.c                                                                                                        <  2:1306172/101‑1 (MQ=255)    cATCTGGCGCGGATCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.CGA.G.Cg                                                                                                       <  2:904196/101‑1 (MQ=255)      tCTGGCGCGGATCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCTGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGAc                                                                                                     <  1:3469988/101‑1 (MQ=255)      tCTGGCGCGGATCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGAc                                                                                                     <  1:794561/101‑1 (MQ=255)      gatGGCGCGGATCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGAc                                                                                                     <  1:3146668/99‑1 (MQ=255)       cTGGCGCGGATCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGAcc                                                                                                    <  1:460765/101‑1 (MQ=255)        tGGCGCGGATCGAAAGCGGGTCCGAGGGGGTGATGGTGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCC.CCCC.GGGCTTAGGCCC.GTC.G.CGAccc                                                                                                   >  2:556172/1‑101 (MQ=255)        tGGCGCGGATCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGAccc                                                                                                   >  1:1407820/1‑101 (MQ=255)        tGGCGCGGATCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGAccc                                                                                                   >  1:1389288/1‑101 (MQ=255)        tGGCGCGGATCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGAccc                                                                                                   <  1:2951433/101‑1 (MQ=255)        tGGCGCGGATCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGAccc                                                                                                   >  1:1330095/1‑101 (MQ=255)         ggCGCGGATCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGACccg                                                                                                  <  2:1407713/101‑1 (MQ=255)          gcgcGGATCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGACccgc                                                                                                 >  2:604921/1‑101 (MQ=255)          gcgcGGATCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGACccgc                                                                                                 <  1:468662/101‑1 (MQ=255)              ggATCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGACccgc..cccc                                                                                           >  1:1523826/1‑98 (MQ=255)                aTCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGACCCGC..C.ggggg                                                                                        >  1:720214/1‑101 (MQ=255)                 tCGAAGGCGGGTCGGGGGGGGTGAGGGGGCGCTCGGCCGATCAGTTCTGAGCGGGAGGGGTTTTCG.CCCG.GGGCTTGCGCCG.GGG.G.CGACCCGC..C.GGGGGc                                                                                       <  2:620473/101‑1 (MQ=25)                   gAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGGCCCGC..C.gggggggc                                                                                     >  1:4099522/1‑98 (MQ=255)                   gAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGACccgc..cccgggggg                                                                                      >  2:2342790/1‑93 (MQ=255)                    aaaGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGACCCGC..C.GGGGGCGcc                                                                                    >  2:2074690/1‑101 (MQ=255)                         gggTCGGGGGGGGTGAGGGGGCTCTCGGCCGATCAGTTCTGGGCGGCGGGGGTTTCCC.CCCC.GGGTTTGCGCCG.GGG.G.CGCCCCGC..C.GGGGGCTCCG.c.ccc                                                                             <  1:2853994/101‑1 (MQ=25)                            gcggggggggTGATGGGCCCCGCGGCCGATCAGTTCTGGGGGGCGGGGGTTTTCG.CCCG.GGGCTTGCGCCG.GGG.G.CGCCCCGC..C.GGGGGCTCCG.C.CCCCgg                                                                          <  2:4321120/96‑1 (MQ=21)                             cggggggggTTTTGGGGCTGGGGGCGGTTTAGTTGGGAGCGGGGTGGGTTTCCT.CCCG.GGGTTTGCGCCC.GGG.G.GAACCCGC..C.GGGGGCTCCG.C.CCCCGGa                                                                         <  1:468435/97‑1 (MQ=9)                             cggggggggTGGGGGGGCTCGCGCCCGTCGAGTTCGGAGGGGCGGGGGTTCCCG.CCCG.GGGCTTGCCCCG.GGG.G.CGCCCCGC..C.GGGGGCTCCG.C.CCCCGGa                                                                         <  2:21674/97‑1 (MQ=12)                             cggggggggTGGGGGGGCTCCGGGCCGATCAGTTCTGAGGGGGGGGGGTTTCCG.CCCG.GGGCTGGCGCCG.GGG.G.CGCCCCGC..C.GGGGGCTCCG.C.CCCCGGa                                                                         <  2:46190/97‑1 (MQ=16)                              cGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCTGCAGGGGATTTCT.CCCA.GGGCTTGCGCCC.GGG.G.CGACCCGC..CTGGGCGCTCAC.C.CCCCgcc                                                                         >  2:2957849/1‑99 (MQ=37)                              cGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGACCCGC..C.GGGGGCTccagatcggaag                                                                          >  2:3502815/1‑91 (MQ=255)                               gAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGACCCGC..C.GGGGGGTCCC.c.cccccgccc                                                                       >  1:2044393/1‑96 (MQ=255)                               gAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGACCCGC..C.GGGGGGGCCC.c.cccccgccc                                                                       >  1:1893129/1‑96 (MQ=37)                                ggggggTGGGGGGGCTCTCGGCCGATCGGTTGTGAGGGGCGGGGGTTTCCC.CCCC.GGCCTTGCGCCG.GGG.C.CCCCCCGC..C.GGGGGCTCCG.C.CCCCGGAccc                                                                      <  1:1802373/100‑1 (MQ=16)                                aGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGACCCGCCGC.GGGGGCGCGG.C.CCCCgccc                                                                        >  2:1528789/1‑98 (MQ=25)                                 gggggTGAGGGGGCTCCCGGCCGATCGTTTCTGCGCGG.GGGGGTTTTCC.CCCCGGGGCTTGCGCCC.GGG.G.CGCCCCGC..C.GGGGGCTCCG.C.CCCCGGAcccc                                                                     <  2:2048375/101‑1 (MQ=16)                                  ggggTGGGGGGGCCCCCGGCCGTTCATTTCGGGGGGGCGGGGGTTTCCG.CCCG.GGGTTTGCGCCG.GGG.G.CGCCCCGC..C.GGGGGCTCCG.C.CCCCGGAccccc                                                                    <  2:2583375/101‑1 (MQ=12)                                      tGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGACCCGC..C.GGGGGGGCCG.CGCCCCCGCcccccccc                                                                 >  2:2600634/1‑98 (MQ=25)                                      tGATGGGCCTCTCGGCCGATCATTTCTGGGCGGCGGGGGTTTCCG.CCCC.GGGCTTGCGCCG.GGG.G.CGCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGAc                                                                <  2:457846/101‑1 (MQ=25)                                      gtaTGGGGCTCTCGGCCGATCATTTCTGAGCGGCGGGGGTTTCCG.CCCC.GGGCTTGCGCCG.GGG.G.CGCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGAc                                                                <  2:1952247/99‑1 (MQ=25)                                          ggggCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGACCCGC..C.CGGGGGGCCC.C.CCCCCGGCCCCCCCACTTcc                                                            >  1:2097671/1‑100 (MQ=25)                                               cctcGGCGGATCAGTTGGGGGGGGGGGGGGTTTCCG.CCCC.GGGTTCGCGCCG.GGG.G.CGCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGc                                                       <  1:3297343/100‑1 (MQ=16)                                                 ccgcccGCTCAGTTCTGGGGGGGGGGGGTTTCCG.CCCC.GGGCTGGCCCCG.GGG.C.CGCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGt                                                     <  2:811632/97‑1 (MQ=19)                                                  cgcccGATCAGTTCTGGGGGGGGGGGTTTTCCG.CCCC.GGGCGGGCGCCC.GGG.G.CGCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTa                                                    <  2:553510/98‑1 (MQ=21)                                                    gCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGACCCGC..C.GGGGGGGCCC.C.CCCCCGGCCCCCCCACTTCTGATGCggctt                                                  >  2:1963958/1‑97 (MQ=21)                                                      ccgtCAGTTCTGTGGGGGGGGGAATTGCG.GCAG.GGGCTTGCGCCC.GGG.C.CCACCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTATTTg                                                <  2:1355188/98‑1 (MQ=21)                                                       gATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGACCCGC..C.GGGGGGGCCG.C.CCCCCGGCCCCCCCCCTTCCGATGCGTAttttg                                               >  2:1880205/1‑99 (MQ=21)                                                          cggTTCGGAGGGGCGGGGGTTTTCG.CCCC.GGGCTTGCCCCG.GGG.C.CGCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTATTTGAGcc                                            <  2:432313/99‑1 (MQ=25)                                                           ggttcgggggggCGGGGGCTTCCG.CCCG.GGGCTGGCGCCC.GGG.G.CGCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTATTTGAGCCa                                           <  1:2652519/91‑1 (MQ=25)                                                             tgcgggggggCAGGGTATTCCC.CCCG.GGGCTTCCGCCC.GGG.C.CGCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTATTTGAGCCAAg                                         <  2:2097534/93‑1 (MQ=25)                                                                   gcggggggggTTTCCC.CCCC.GGGCTGGCGCCG.GGG.G.CGCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTATTTGAGCCAAGAAAAAg                                   <  1:3353680/95‑1 (MQ=25)                                                                      gggggggGTTTCGCCCCC.GGGCGTGCCCCCGGGG.G.CGCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTATTTGAGCCAAGAAAAAGc                                  <  1:1513174/98‑1 (MQ=25)                                                                      gCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGACCCGC..C.GGGGGGGCCGCC.CCCCGGGCCCCCTCCCTT.ACATGCGGTTTTTAGTCAAAaaaaaagcc                                >  2:2968572/1‑97 (MQ=9)                                                                       gcggggGTTTCC.CCCC.CGGCCTGCCCCC.GGG.GCCCCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTATTTGAGCCAAGAAAAAGCCg                                <  1:1964087/99‑1 (MQ=25)                                                                            gATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGACCCGC..C.GGGGGGGGCGCC.CCCCGGCCCCCCCCCCTTC.CATGCGTATTTTTGCCAAGaaaaaaaagacaagc                          >  2:524273/1‑91 (MQ=9)                                                                                 ccccccc.GGGCTGGCGCCC.GGG.G.CGCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTATTTGAGCCAAGAAAAAGCCGACAGGCGCtt                      <  1:3392300/98‑1 (MQ=255)                                                                                  g.CCCC.GGGCTTGCGCCG.GGG.C.CGCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTATTTGAGCCAAGAAAAAGCCGACAGGCGCtttt                    <  1:2600805/101‑1 (MQ=255)                                                                                   ccccc.GGGGTTGCGCCG.GGG.G.CCCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTATTTGAGCCAAGAAAAAGCCGACAGGCGCtttt                    <  2:3955039/100‑1 (MQ=38)                                                                                   ccccc.GGGCGGGCGCCG.GGG.G.CGCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTATTTGAGCCAAGAAAAAGCCGACAGGCGCtttt                    <  1:296391/100‑1 (MQ=38)                                                                                    cccc.GGGGCTGCCCCC.GGGCG.CCCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTATTTGAGCCAAGAAAAAGCCGACAGGCGCtttt                    <  2:3659703/101‑1 (MQ=37)                                                                                      gc.GGGTTGGCGCCC.GGC.C.GGCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTATTTGAGCCAAGAAAAAGCCGACAGGCTCTTTTGAg                 <  1:556224/100‑1 (MQ=37)                                                                                       cggggCTTGCGCGG.GGG.C.CGCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTATTTGAGCCAAGAAAAAGCCGACAGGCGCTTTTGAg                 <  1:469075/99‑1 (MQ=38)                                                                                        ggggcgcgccccc.GGG.G.CCCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTATTTGAGCCAAGAAAAAGCCGACAGGCGCTTTTGAgg                <  1:372024/91‑1 (MQ=38)                                                                                                  cccgggg.g.CCCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTATTTGAGCCAAGAAAAAGCCGACAGGCGCTTTTGAGGTTCGGAAAt       <  1:2503128/97‑1 (MQ=255)                                                                                                   ccgggg.g.CCCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTATTTGAGCCAAGAAAAAGCCGACAGGCGCTTTTGAGGTTCGGAAAtt      <  1:604989/98‑1 (MQ=255)                                                                                                       gg.g.CGCCCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTATTTGAGCCAAGAAAAAGCCGACAGGCGCTTTTGAGGTTCGGAAATTGaaa  <  1:1880329/101‑1 (MQ=255)                                                                                                        |                                                                                                           CTGCATCTGGCGCGGATCGAAAGCGGGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCG.CCCC.GGGCTTGCGCCC.GGG.G.CGACCCGC..C.GGGGGCTCCG.C.CCCCGGACCCCCTGACTTCAGATGCGTATTTGAGCCAAGAAAAAGCCGACAGGCGCTTTTGAGGTTCGGAAATTGAAA  >  NC_014034/509948‑510147 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG