New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	744645 =	52 (0.240)	10 (0.050)	9/190	28.5	0.19	intergenic (+30/+182)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	= 1699955	33 (0.150)					intergenic (+28/+15)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
Rejected: Position hash score below cutoff.

GCTTCACGCCCTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTG  >  NC_014034/744545‑744745                                                                                                     |                                                                                                      gCTTCACGCCCTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCgg                                                                                                       <  2:932308/101‑1 (MQ=255) gCTTCACGCCCTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCgg                                                                                                       <  2:3834004/101‑1 (MQ=255) gCTTCACGCCCTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCgg                                                                                                       <  2:3697117/101‑1 (MQ=255)  cTTCACCCCCTGGCTCAAAATCTATATCGAGCGGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGGGCGTGCGCCTGggg                                                                                                      <  2:70880/101‑1 (MQ=255)   ttCACGCCCTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGc                                                                                                     >  1:485458/1‑101 (MQ=255)   ttCACGCCCTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTAGCCCGGGGCGCGCTTGCGCCTCggtc                                                                                                     >  2:4421392/1‑99 (MQ=255)    tCACGCCCTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCg                                                                                                    <  2:2260275/101‑1 (MQ=255)     cACGCCCTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGa                                                                                                   <  1:1387420/101‑1 (MQ=255)       cGCCCTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGAcc                                                                                                 <  1:1995377/101‑1 (MQ=255)        gCCCTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCTCCCGGGGCGCGCTTGCGCCTCGGGCGAccc                                                                                                <  2:4067579/101‑1 (MQ=255)        gCCCTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGAccc                                                                                                <  2:554846/101‑1 (MQ=255)         cccTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACccg                                                                                               <  2:4074308/101‑1 (MQ=255)         cccTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGAGCGCCTTCGCCTCGGGCGACccg                                                                                               >  1:143671/1‑101 (MQ=255)          ccTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACccgc                                                                                              <  1:3238481/101‑1 (MQ=255)             gggtCAAGATCTATATCGAGCAGCACCGCGACTTGATCTTTCCGCCGGTGACGGCCGGAGATTTCGCCCGGGGCGCGCTTGCGCTTCGGGCGACCCGCCgg                                                                                           <  2:2440139/98‑1 (MQ=255)             ggCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACccgcccg                                                                                           >  2:67818/1‑99 (MQ=255)              gCTCAAGATCTAGATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCcgg                                                                                          >  1:2428290/1‑101 (MQ=255)               cTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGTTTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCgggg                                                                                         <  2:885189/101‑1 (MQ=255)                taaaGATCTAGACGGAGCAGCCCCGCGCCAGGATTTTCCCGCCGGTGCCGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCggggg                                                                                        <  2:3015032/99‑1 (MQ=255)                 cAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGc                                                                                       >  1:3061280/1‑101 (MQ=255)                  aaGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCcgggggg                                                                                      >  1:4127208/1‑99 (MQ=255)                   aGATCTATAGCGAGCAGCACCGCGACATGATCTTTCCGCCGGGGACGGCTTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTc                                                                                     <  2:1813635/101‑1 (MQ=255)                    gATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCggggggccc                                                                                    >  1:742562/1‑97 (MQ=255)                     aTCTAGATCGAGCAGCCCCGCGACATGATCTTGCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCg                                                                                   <  2:1491826/101‑1 (MQ=255)                        tataTCGAGCAGCCCCGCGACATGATCTTCCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCG.ccc                                                                               <  1:3309181/101‑1 (MQ=255)                        tataCCGAGCAGCCCCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCG.ccc                                                                               <  1:2788424/101‑1 (MQ=255)                          tatCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTGGGGCGCCCCGCCGGGGGCTCCG.ccccc                                                                             <  2:3394686/101‑1 (MQ=255)                          taccGAGCACCCCCGCGACATGATCTTCCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCG.ccccc                                                                             <  2:4019706/98‑1 (MQ=38)                           atggggcagccCCGCAACATGATCTTCCCGCCGGTGCCGGCCTGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCg                                                                            <  2:3061059/96‑1 (MQ=25)                           accGAGCAGCCCCGCGACATGTTTTTCCCGCCGGTGCCGGCCTGAGTTTCCGCCCGGGGCCCGCTGGCCCCTGGGGCGCCCCGCCGGGGGCTCCG.CCCCCg                                                                            <  1:19598/99‑1 (MQ=19)                                 cgccccgccgACATGTTCTTCCGGCGGGGGCCGGCCGGAGTTTCCGCCGGGGGCGCCCTTGCCCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGAcccc                                                                      <  1:3192187/93‑1 (MQ=12)                                  agcaCCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGGTCCG.CCCCCGGGccccc                                                                     >  2:1452110/1‑101 (MQ=255)                                   cgaCCGAGACATGTTCTTCCCGGCGGGGCCGGCTTGAGATTTCGCCCGGGGCGCGCTTCCCCCCGGGGCCCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCg                                                                    <  1:3545900/99‑1 (MQ=16)                                   cccccGCGACGTGATCTTCCCGCCGGGGCCGGCCTGAGATTCCGCCCGGGGCGCGCTTGCCCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCg                                                                    <  2:1979812/98‑1 (MQ=25)                                      ccgttaCATGTTCTTCCCGCCGGTGCCGGCCTGGGTTTCCGCCGGGGGCGCGCTTGCGCCGGGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGa                                                                 <  2:2364372/96‑1 (MQ=18)                                       cgcgACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGGGCCC.CCCCCCGACCCCCcggca                                                                >  2:1203875/1‑99 (MQ=38)                                         cgACATGTTCTTCCCGCCGGTGCCGGCCTGAGATTCCGCCCGGGGCGCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGatat                                                              <  2:4086688/101‑1 (MQ=37)                                          gACATGTTCTTCCCGCCGGTGACGGCCTGAGTTTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATAtt                                                             <  2:3839195/101‑1 (MQ=37)                                           aCATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGGCCCG.CCCCCGGCCCCCCCGGGTAttt                                                            >  1:3492117/1‑101 (MQ=38)                                           aCATGATCTTCCCGCCGGTGCCGGCCTGAGATTCCGCCCGGGCCGCGCTTGCCCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATAttt                                                            <  2:901553/101‑1 (MQ=25)                                            cATGATCTTCCCGCCGGTGACGGCCTGAGATTTCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTg                                                           <  2:2428133/101‑1 (MQ=255)                                             aTGTTCTTTCCGCCGGTGGCGCCCTGAGATTCCGCCCGGGGCGCGCTTGCCCCTGGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTgg                                                          <  1:67831/101‑1 (MQ=25)                                             aTGTTCTTCCCGCGGGGGACGGCGTGAGTTTTCGCCCGGGGCCCGCTGGCGCCTGGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTgg                                                          <  1:2125448/101‑1 (MQ=18)                                             aTGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGGCCCGCCCCCCGGCCCCCCggggattttg                                                           >  1:128731/1‑94 (MQ=37)                                              ttttttccccgcggGTGCGGGCCTGGGATTCCACCGGGGGCGCGCTGCCCCCTCGGGCAACCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTggg                                                         <  2:2887454/93‑1 (MQ=12)                                                 tCTTCCCGCGGGTGGCGGCCTGAGATTTCGCCCGGGGCGCGCTGGCGCCTCGGGCGACCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCa                                                      <  1:635542/101‑1 (MQ=25)                                                  cTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCG.CCCCCGGGCCCCCGGGATATTTGGGGCaa                                                     >  2:2214964/1‑101 (MQ=255)                                                   tttCCGCCGGTGACGGCCTGAGTTTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAg                                                    <  1:2943723/101‑1 (MQ=255)                                                        gccgGTGGCGGCCTGAGTTTGCGCCGGGGGCGCGCTGGCCCCGGGGGCGACCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatgaa                                               <  1:1203968/101‑1 (MQ=18)                                                        gccgGTGGCGGCCTGAGATTCCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatgaa                                               <  2:2897948/101‑1 (MQ=255)                                                          cgggggcGGCCTGAGCTTGCGCCCGGGGCCCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatgaaat                                             <  1:3221075/95‑1 (MQ=21)                                                              gccGGCCGGAGTTTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAaatgaat                                         <  1:2330314/99‑1 (MQ=255)                                                               gcgcccggagaTTCCCCCCGGGGCGCGCTTGCCCCCCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAaatgaatg                                        <  2:2501238/94‑1 (MQ=18)                                                               aCGGCCGGAGTTTCCGCCCGGGGCGCGCTTGCGCCGCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAaatgaatg                                        <  1:776081/101‑1 (MQ=21)                                                                   ccTGAGTTTTCGCCGGGGGCGCGCTGGCGCCTCGGGCCCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACtt                                    <  1:3051089/101‑1 (MQ=21)                                                                   ccTGAGGTTCCGCCCGGGGCGCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACtt                                    <  1:2227241/101‑1 (MQ=255)                                                                            tCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgc                           >  2:2070494/1‑101 (MQ=255)                                                                            ccGCCGGGGGCGCCCTCGCGCCCGGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgc                           <  2:2486506/100‑1 (MQ=18)                                                                                cgggggCGCGCTTGCCCCTGGGGCCCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgcggcg                       <  2:727829/99‑1 (MQ=21)                                                                                  ggggCGCGCTCGCGCCTGGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGt                     <  2:962129/101‑1 (MQ=255)                                                                                                     ggCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTg  <  1:2215103/101‑1 (MQ=255)                                                                                                     |                                                                                                      GCTTCACGCCCTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTG  >  NC_014034/744545‑744745 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 27 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG