New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2330295	22 (0.100)	23 (0.110)	8/192	29.4	0.51	intergenic (+270/+42)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
	?	NC_014034	2330296 =	22 (0.100)					intergenic (+271/+41)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

TATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCCGGGG....GCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCA  >  NC_014034/2330195‑2330389                                                                                                     |                                                                                                    tATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccggggg                                                                                                     <  1:961024/101‑1 (MQ=255) tATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCAACTGGGGCCAAAGAtaccgggggtccggggg                                                                                                     >  2:1762967/1‑101 (MQ=255)  aTTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggc                                                                                                    >  2:2498458/1‑100 (MQ=255)   tttGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcg                                                                                                   >  1:1218570/1‑99 (MQ=255)    ttGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcgg                                                                                                  <  2:495437/101‑4 (MQ=255)     tGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcgga                                                                                                 <  2:3828694/101‑5 (MQ=255)      gcgcCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcggag                                                                                                <  2:4159660/101‑6 (MQ=255)      gcgcCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcggag                                                                                                <  1:2498621/101‑6 (MQ=255)      gcgcCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcggag                                                                                                <  1:4234172/101‑6 (MQ=255)          cAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGGCCAAGAtcccgggggtccgggggcggagcccc                                                                                            >  2:64940/1‑92 (MQ=38)          cAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGT.CCGGGG....Gcggagcccc                                                                                       <  1:3998271/101‑9 (MQ=38)           aaGAAAAGGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcggagccccc                                                                                           >  1:282233/1‑91 (MQ=37)           aaGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcggagccccc                                                                                           <  2:1780537/101‑11 (MQ=38)           aaGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGT.CCGGGG....Gcggagccccc                                                                                      <  2:903932/101‑10 (MQ=38)                             gcATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGccccgggcc                                                                        >  1:2942257/1‑94 (MQ=18)                               aTGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGGCGAgggggcg                                                                      >  2:3969899/1‑96 (MQ=21)                                    gggCCCCAGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGAGGCATCGccccc                                                                 >  2:2137666/1‑98 (MQ=21)                                            gATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGGGCCGAGGGATCGCCCCGGCGaaaac                                                         >  2:2640028/1‑99 (MQ=18)                                               cACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGGGGCGTGGCCCCCGCGCAAACCCt                                                      >  2:2202601/1‑101 (MQ=12)                                                cccGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCtt                                                     <  2:191303/100‑1 (MQ=21)                                                 ccGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAGCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTa                                                    <  2:2243913/101‑1 (MQ=25)                                                         ccGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGAc                                            <  2:689728/101‑1 (MQ=25)                                                         ccGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGAc                                            <  2:2743233/101‑1 (MQ=25)                                                         ccGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGGGCCGGGGCCTCGCCCCCGCGAAAACCCCTAGTAAACAc                                            >  2:3241828/1‑101 (MQ=12)                                                           gggCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGAccg                                          <  1:1435186/101‑1 (MQ=25)                                                             gcggcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGCGGGGGCGCCTCCGCGGAAACCCCTTGTAAAGaacccc                                        >  1:3392350/1‑96 (MQ=2)                                                             gcggcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGAGGCAGCGCCCCGGCGAAATCCCCTAGTAAAAAacgcc                                        >  1:4179500/1‑101 (MQ=16)                                                              cggcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGTCGCCGAGGCATCTCCTCGGCGAAATCCCTTAGTAAAGAccgccc                                       <  1:3960877/101‑1 (MQ=21)                                                               ggcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGGGCCCGGGCATCGCCCCCGCGAAAAACCCTCGTAAAAAacgcccc                                      >  1:3042813/1‑100 (MQ=2)                                                                 cTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGTCGCCGGGGCATCGCCTCGGCGAAAACCCCTTGTAAAAACCGCCcccg                                    >  2:4078441/1‑101 (MQ=12)                                                                  tttCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGGCCCGGCGCCCCCTCGGCCGAATCCCCTAATGAAAAacgcccgccc                                   >  2:3883915/1‑99 (MQ=2)                                                                  tttCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGAGGCATCGCCTCCGCGAAAAACCTCTGTAAAAAAAGCCCGCgg                                   >  2:3823067/1‑101 (MQ=9)                                                                    tccccgggggCCAGAGATCCCGGGGGGCGGGGGGCGGAGCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGAc                                 <  2:2942036/95‑1 (MQ=18)                                                                     cACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGGGGAGCCCCG.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACa                                <  2:3254669/101‑1 (MQ=25)                                                                     cACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGGGGGATCGCCTCGGCGAAAACCCTTTGTTAAAACCGCCCGCGGACa                                >  2:3000139/1‑101 (MQ=12)                                                                          ggggCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGAGGGATCGCCCCCGCGGAAAACCTTAGTAAAGAACGCCCGCGGACAgggga                           >  1:2308054/1‑99 (MQ=9)                                                                               cAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGTCGCCGAGGCCTCGCCCCGGCGAAAAACCCTAGGAAAAAACGCCCGCCGGCACGGCTCCgca                      >  2:1757986/1‑99 (MQ=2)                                                                               cAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGAGGGATCGCCCCGGCGAAAACCCTTAGTAAAGACCGCCCGCGGGCAgggggcccca                      >  2:3484652/1‑94 (MQ=12)                                                                                aaaGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAg                     <  1:1485819/101‑1 (MQ=21)                                                                                 aaGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGGGGGATCGCCCCCGCGGAAAACCCTAGTAAAAAACGCCCCCGGGCAAGGGGCCGCAgg                    >  1:3456122/1‑101 (MQ=0)                                                                                 aaGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGAGGGGTCGCCCCGGCGAAATACCCTTGTAAAAACCGCCCGCGGACAGGGGACCGAAgg                    >  2:86705/1‑101 (MQ=9)                                                                                  aGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGTGCCGAGGCCTCGCCTCCGCGAAAACCCCTCGTAAAGAACCCCCCCGGGCAGGGAGCCGaaagg                   >  1:2033442/1‑98 (MQ=2)                                                                                   gATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGAGGGATCGCCCCGGCGAAAACCCCTAGTAAAAAACCCCCCCGGACAGGGATCCGAAgggc                  >  1:662947/1‑99 (MQ=9)                                                                                                gggggg....gCCCCCGGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCa  <  1:682636/99‑1 (MQ=255)                                                                                                     |                                                                                                    TATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCCGGGG....GCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCA  >  NC_014034/2330195‑2330389 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG