New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1732710 =40 (0.190)30 (0.140) 19/190 22.0 0.19 intergenic (‑134/‑269) RCAP_rcc01601/tgt FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
?NC_014034 2555844 = 209 (0.920)intergenic (‑707/+39) mraZ/RCAP_rcc02384 protein MraZ/Mrp/NBP35 family protein
Rejected: Position hash score below cutoff.

GTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GA.CCGGGC..GGGCG..G..G..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTT  >  NC_014034/1732612‑1732810
                                                                                                            |                                                                                                    
gTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGGCGCGGC.GG.CCCCGG..GGGGg..g..g..ggg                                                                                                    >  1:3211375/1‑99 (MQ=255)
  aTCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCGGC.CCGGGC..GGGGg..g..g..gggc                                                                                                   >  1:3565799/1‑98 (MQ=255)
  aTCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GA.CC.CGC..GGCCg..g..g..gggacc                                                                                                 >  2:3482098/1‑96 (MQ=255)
   tCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GA.CCCGGG..GGGGg..g..g..gggccc                                                                                                 >  2:3258430/1‑96 (MQ=255)
     ggggggAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGG..GGGGG..G..G..Gcgcccc                                                                                                >  1:2144327/1‑100 (MQ=255)
            gagGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GAGCCGGGC..CGGGG..G..G..GCGCCGGCCccccc                                                                                         >  2:3598854/1‑101 (MQ=255)
             agGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGC..GGGGG..G..G..GCGCCCCCCcccccc                                                                                        >  1:1317387/1‑100 (MQ=255)
              ggTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCAccccc                                                                                         <  2:4112580/101‑1 (MQ=25)
               gTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCg                                                                                        <  2:4150718/101‑1 (MQ=25)
               gTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCg                                                                                        <  1:1866188/101‑1 (MQ=25)
                tAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCgg                                                                                       <  2:2123651/101‑1 (MQ=25)
                tAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGC..AGG.G..G..G..CCCCCCGCCccggctcccc                                                                                    >  2:2207937/1‑93 (MQ=255)
                 aaaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGG..GGGGG..G..G..GCCCCCCCCcccccccccc                                                                                    >  2:2846371/1‑96 (MQ=255)
                 aaaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGC..GGGGGATC..C..GCCCCCGCACCCCCGGc                                                                                      <  1:3049891/101‑1 (MQ=37)
                 aaaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGC..GGGGG..G..G..CCGCCCCCCcccccccccc                                                                                    >  2:452225/1‑96 (MQ=255)
                  aaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCg                                                                                     <  1:2230478/101‑1 (MQ=25)
                   aGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGt                                                                                    <  2:2039214/101‑1 (MQ=25)
                    ggCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTa                                                                                   <  1:4291833/101‑1 (MQ=25)
                     gCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTAt                                                                                  <  1:2822342/101‑1 (MQ=25)
                       cGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTAttt                                                                                <  2:2197933/101‑1 (MQ=25)
                             tGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCa                                                                          <  1:3599102/101‑1 (MQ=21)
                                ggggCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaaga                                                                       <  2:4033100/101‑1 (MQ=21)
                                 gggCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaagaa                                                                      <  2:937029/101‑1 (MQ=21)
                                  ggCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaagaag                                                                     <  2:2109448/101‑1 (MQ=18)
                                  ggCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaagaag                                                                     <  2:1852620/101‑1 (MQ=18)
                                    cGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAgaagaa                                                                   <  1:2161466/101‑1 (MQ=18)
                                     ggAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGaaa                                                                  <  2:1299150/101‑1 (MQ=18)
                                      gAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAAc                                                                 <  2:2078712/101‑1 (MQ=18)
                                        aaGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACaa                                                               <  1:3918651/101‑1 (MQ=18)
                                        aaGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACaa                                                               <  1:3469757/101‑1 (MQ=18)
                                        aaGCCGCGTGACAAGCAGGGTTTCGCCGCGGCGGGGCAGCGGC.GACCCGGGCAGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACaa                                                               <  2:1058920/101‑1 (MQ=18)
                                          gCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGc                                                             <  2:463680/101‑1 (MQ=18)
                                          gCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGc                                                             <  1:3525803/101‑1 (MQ=18)
                                               gTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGAc                                                        <  2:3214114/101‑1 (MQ=18)
                                                tGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGAcc                                                       <  1:2781204/101‑1 (MQ=18)
                                                 gCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCa                                                      <  1:3881522/101‑1 (MQ=18)
                                                         gggTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGcccccc                                              <  2:2977817/101‑1 (MQ=18)
                                                          ggTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCt                                             <  2:2144188/101‑1 (MQ=18)
                                                          ggTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCt                                             <  2:3015952/101‑1 (MQ=18)
                                                            tttCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGc                                           <  2:1831561/101‑1 (MQ=18)
                                                             ttCGCCGCGGCGGGGCCGCGGC.GACCCGGGC..GGGGT..GTCC..GCCGCCACGCCCCTGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCa                                          <  2:3696035/101‑1 (MQ=25)
                                                             ctccccgcTGCGGGGCCGCCGC.GACCCGGGCGGGGGCC..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCa                                          <  2:2006285/97‑1 (MQ=21)
                                                                gccgcGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGcc                                       <  2:667191/101‑1 (MQ=18)
                                                                   gcggggGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCa                                    <  2:1317290/101‑1 (MQ=18)
                                                                    cggcggGGCCGCGGC.GACCCGGGG..GGGGG..G..GCCGCCCCCCCCCCCCCCGCGGATTTTCGCCCAGAAGAAACAAACGGGGCCAAGCCCCCCCCCACCCGccg                                   >  2:2082861/1‑99 (MQ=255)
                                                                     ggcggGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATg                                  <  1:3258662/101‑1 (MQ=18)
                                                                       cggGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGcc                                <  1:298500/101‑1 (MQ=18)
                                                                                                  cgggggctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAgg            <  1:2137218/91‑1 (MQ=255)
                                                                                                   gggggctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAggg           >  1:2927042/10‑101 (MQ=255)
                                                                                                   gggggctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAACGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGGCAACAGGCAAggg           >  1:4359490/10‑101 (MQ=25)
                                                                                                     gggctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGcc         <  1:345314/94‑1 (MQ=255)
                                                                                                      ggctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGccc        >  2:2670165/7‑101 (MQ=255)
                                                                                                      ggctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGccc        <  1:3384421/95‑1 (MQ=255)
                                                                                                      ggctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGccc        >  1:3446233/7‑101 (MQ=255)
                                                                                                      ggctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAAACCCCCCTGCCGCCGCATGCCGTCCGCGTCAACAGGCAAGGGccc        >  1:509692/7‑101 (MQ=37)
                                                                                                       gctccgCCCCCGCCCCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGCCCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGcccc       <  1:2208076/96‑1 (MQ=255)
                                                                                                       gctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGcccc       >  2:833814/6‑101 (MQ=255)
                                                                                                       gctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGcccc       <  1:2865157/96‑1 (MQ=255)
                                                                                                        ctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCg      <  1:4119566/97‑1 (MQ=255)
                                                                                                        ctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCg      >  2:2334415/5‑101 (MQ=255)
                                                                                                         tccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGc     >  2:2116198/4‑101 (MQ=255)
                                                                                                         tccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGc     >  1:1967848/4‑101 (MQ=255)
                                                                                                          ccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCt    <  1:2889601/99‑1 (MQ=255)
                                                                                                           cgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCtt   >  2:500592/2‑101 (MQ=255)
                                                                                                            gCCCCCGCCCCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCttt  <  2:4265896/101‑1 (MQ=255)
                                                                                                            |                                                                                                    
GTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GA.CCGGGC..GGGCG..G..G..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTT  >  NC_014034/1732612‑1732810

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 39 ≤  ATCG