BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2249301 =	142 (0.790)	78 (0.440)	15/158	20.9	0.52	intergenic (‑97/‑208)	parE/RCAP_rcc02080	DNA topoisomerase IV subunit B/HAD superfamily hydrolase
*	?	NC_014034	= 2600949	0 (0.000)	78 (0.440)	15/158	20.9	0.52	intergenic (+11/‑130)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
Rejected: Position hash score below cutoff.

Only 100 of 210 total aligned reads displayed.


CATGGTGCTCGCTTTCATTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTG.C.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAGCGCCCCCTTCG  >  NC_014034/2249202‑2249400


cATGGTGCTCGCTTTCATTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.c                                                                                                             <  1:638428/101‑1 (MQ=255)


 aTGGTGCTCGCTTTCATTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTG.CGC.CCGTCCCGTGCCGGGACT.cc                                                                                                            <  2:3212088/101‑1 (MQ=255)


   ggTGCTCGCTTTCATTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.cccc                                                                                                          >  2:499698/1‑101 (MQ=255)


    gTGCTCGCTTTCATTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.ccccc                                                                                                         <  1:3259966/101‑1 (MQ=255)


     tGCTCGCTTTCATTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCg                                                                                                        <  2:2477926/101‑1 (MQ=255)


      tcTCGCTTTCATTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCgg                                                                                                       <  2:1396408/100‑1 (MQ=255)


      gCTCGCTTTCATTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTGTGCC.C.CCGTCCCCGGCCGGGACT.CCCCCgg                                                                                                       >  2:707848/1‑101 (MQ=255)


      gCTCGCTTTCATTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCgg                                                                                                       >  1:951100/1‑101 (MQ=255)


        tCGCTTTCATTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGa                                                                                                     <  1:299773/101‑1 (MQ=255)


         cGCTTTCATTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGat                                                                                                    >  2:591856/1‑101 (MQ=255)


          gCTTTCATTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGata                                                                                                   <  1:4172209/101‑1 (MQ=255)


          gCTTTCATTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGata                                                                                                   >  2:1240739/1‑101 (MQ=255)


          gCTTTCATTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGata                                                                                                   <  2:1649251/101‑1 (MQ=255)


          gCTTTCATTGGTATTCTTGAGAGGCACAGATACCGGAGCTTGGGCACCCGGGGCAATAAGGGGCCTCTG.C.CTCCGTCCCGTGCCGCGACT.CCCCCGGGacg                                                                                                   >  2:2938409/1‑99 (MQ=255)


           cTTTCATTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGatat                                                                                                  <  1:2804579/101‑1 (MQ=255)


            tttCATTGGTGTTCTTGAGATGCACAGATACCGTAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATAtt                                                                                                 <  1:3817492/101‑1 (MQ=255)


            tttCATTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATAtt                                                                                                 >  1:4129362/1‑101 (MQ=255)


            tttCATTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATAtt                                                                                                 <  2:1723643/101‑1 (MQ=255)


             ttCATTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATAttt                                                                                                >  2:513543/1‑101 (MQ=255)


             ttCATTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATAttt                                                                                                <  1:830629/101‑1 (MQ=255)


                aTTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAg                                                                                             >  1:1451835/1‑101 (MQ=255)


                 ttGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAgg                                                                                            >  2:3488609/1‑101 (MQ=255)


                 ttGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAgg                                                                                            >  2:1806592/1‑101 (MQ=255)


                  tGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCTCCGGGATATTTGAGGc                                                                                           >  2:241720/1‑101 (MQ=255)


                  tGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGc                                                                                           <  1:3902155/101‑1 (MQ=255)


                  tGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGc                                                                                           >  1:2410246/1‑101 (MQ=255)


                    gtgtTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCaa                                                                                         <  1:219015/101‑1 (MQ=255)


                    gtgtTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCaa                                                                                         >  1:4231972/1‑101 (MQ=255)


                      gtTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGa                                                                                       >  2:1084230/1‑101 (MQ=255)


                      gtTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGa                                                                                       >  1:1188023/1‑101 (MQ=255)


                      gtTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGAAAGa                                                                                       >  1:1700713/1‑101 (MQ=255)


                       ttCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGAt                                                                                      >  2:418850/1‑101 (MQ=255)


                        tCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATg                                                                                     <  1:4378128/101‑1 (MQ=255)


                         cTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGa                                                                                    <  1:3945259/101‑1 (MQ=255)


                          ttGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGaa                                                                                   <  2:272470/101‑1 (MQ=255)


                          ttGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGaa                                                                                   <  1:2292102/101‑1 (MQ=255)


                             agaTGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...ggg                                                                             >  2:83736/1‑101 (MQ=255)


                             agaTGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...ggg                                                                             >  2:4263275/1‑101 (MQ=255)


                                  cacaGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCt                                                                      <  2:2499306/101‑1 (MQ=255)


                                    caGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCttt                                                                    <  2:3655832/101‑1 (MQ=255)


                                     aGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTc                                                                   <  1:1594615/101‑1 (MQ=255)


                                     aGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTc                                                                   <  1:4216614/101‑1 (MQ=255)


                                      gATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCa                                                                  >  1:174611/1‑101 (MQ=255)


                                      gATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCa                                                                  >  2:2338390/1‑101 (MQ=255)


                                      gATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCa                                                                  <  2:1854648/101‑1 (MQ=255)


                                       aTACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCACGATGAA...GGGG..GGCTTTCAt                                                                 >  1:2654751/1‑101 (MQ=255)


                                        tACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATc                                                                <  1:2571701/101‑1 (MQ=255)


                                        tACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATc                                                                >  2:1570295/1‑101 (MQ=255)


                                         aCCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCt                                                               >  1:588565/1‑101 (MQ=255)


                                         aCCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCt                                                               >  1:907763/1‑101 (MQ=255)


                                          ccGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCtt                                                              <  1:3744580/101‑1 (MQ=255)


                                           cGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTg                                                             <  2:1451728/101‑1 (MQ=255)


                                            gCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGc                                                            <  1:1359721/101‑1 (MQ=255)


                                             cAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGcc                                                           >  2:1457976/1‑101 (MQ=255)


                                              aGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCg                                                          <  2:4228665/101‑1 (MQ=255)


                                              aGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCg                                                          >  1:3377750/1‑101 (MQ=255)


                                                  tGGGCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTGATCTTGCGGaaaa                                                      >  2:439733/1‑101 (MQ=38)


                                                   gggCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAat                                                     >  2:625976/1‑101 (MQ=255)


                                                   gggCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAat                                                     <  2:4468/101‑1 (MQ=255)


                                                    ggCACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAata                                                    <  1:3156191/101‑1 (MQ=255)


                                                      cACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATc                                                  <  2:2180251/101‑1 (MQ=255)


                                                      cACCCGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATc                                                  <  2:3982962/101‑1 (MQ=255)


                                                         ccGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCg                                               >  1:2346695/1‑101 (MQ=255)


                                                         ccGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCg                                               >  1:4321817/1‑101 (MQ=255)


                                                          cGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCgg                                              >  1:1909028/1‑101 (MQ=255)


                                                          cGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCgg                                              >  2:3468556/1‑101 (MQ=255)


                                                          cGGGGCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCgg                                              <  1:3170951/101‑1 (MQ=255)


                                                            gggCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCgggg                                            <  1:4246974/101‑1 (MQ=255)


                                                             ggCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCggggg                                           >  2:4366761/1‑101 (MQ=255)


                                                              gCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCgggggg                                          >  2:1158809/1‑101 (MQ=255)


                                                              gCAAGAAGGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCgggggg                                          <  2:3245345/101‑1 (MQ=255)


                                                                 agaggGGGCCTCTCCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGa                                       <  1:2338540/101‑1 (MQ=37)


                                                                   aagGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGGGAA.t                                    >  1:3570651/1‑101 (MQ=255)


                                                                    agGGGGCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.Tg                                   <  2:1526650/101‑1 (MQ=255)


                                                                     gggggCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.Tgg                                  <  1:513595/101‑1 (MQ=255)


                                                                     gggggCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGGGAA.Tgg                                  >  2:3739028/1‑101 (MQ=255)


                                                                      ggggCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGgc                                 <  1:69665/101‑1 (MQ=255)


                                                                         gCTCTGCC.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCa                              <  1:1006474/101‑1 (MQ=255)


                                                                            ctgcc.c.ccGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..Gcc                         >  1:258922/5‑101 (MQ=255)


                                                                            ctacc.c.ccGTCCCGTGCCGGGGCT.CCCCCGGGATATTTGATGCAAGATGAA...GGGG..GGGTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..Gcc                         <  1:51823/97‑1 (MQ=37)


                                                                               cc.c.ccGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCaga                      <  1:4090986/100‑1 (MQ=255)


                                                                                  c.ccggcccgtGCCGGGACT.CCCCGGGGATATTTGAGGCAAGATGAA...GGGG..GGGTTTCATCTTGCCGAAAATATCGCGGGGGGTGAA.TGGCGCA..GCCAGAgg                    <  1:2938630/101‑1 (MQ=38)


                                                                                    ccgtcccgtGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAggg                   >  2:929917/1‑101 (MQ=255)


                                                                                       tcccgtGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAgggggg                >  2:2576331/1‑101 (MQ=255)


                                                                                        cccgtGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGc               >  1:2453951/1‑101 (MQ=255)


                                                                                         ccgtGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCa              <  1:3924492/101‑1 (MQ=255)


                                                                                          cgtGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAg             <  2:1010498/101‑1 (MQ=255)


                                                                                          cgcaagcggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGAT..GCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGCGAA..GCCAGAggggg                 >  2:1957836/8‑101 (MQ=21)


                                                                                          cgcaagcggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGAT..GCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGCGAA..GCCAGAggggg                 <  1:1337573/94‑1 (MQ=18)


                                                                                           gcaagcggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGAT..GCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGCGAA..GCCAGAgggggg                >  2:744283/7‑101 (MQ=18)


                                                                                             gCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAgcgc          >  2:2978001/1‑101 (MQ=255)


                                                                                              ccGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAGCGcc         <  1:499750/101‑1 (MQ=255)


                                                                                                gggACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAGCGcccc       >  2:110774/1‑101 (MQ=255)


                                                                                                   gcT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAGCGcccccct    <  2:2654579/100‑3 (MQ=255)


                                                                                                   actccccccGGGATATTTGCAGCAAGATGAAACCGGAT..GCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGCGAA..GCCAGAGGGGGGCAGCGccc        <  1:2070380/97‑1 (MQ=17)


                                                                                                   aCT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAGCGcccccct    >  1:3225093/1‑99 (MQ=255)


                                                                                                   aCT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAGCGcccccct    <  1:2906216/101‑3 (MQ=255)


                                                                                                   aCT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAGCGcccccct    <  2:3414293/101‑3 (MQ=255)


                                                                                                     t.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAGCGccccccttc  >  1:1825755/1‑97 (MQ=255)


                                                                                                      ccccccGGGATATTTGCGGCAAGATGAA...GGGGCATGATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAAAGGCCAAGAGGGGGCAGCGccccc      <  2:2095384/100‑1 (MQ=0)


CATGGTGCTCGCTTTCATTGGTGTTCTTGAGATGCACAGATACCGCAGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTG.C.C.CCGTCCCGTGCCGGGACT.CCCCCGGGATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAGCGCCCCCTTCG  >  NC_014034/2249202‑2249400

Base quality scores:


ATCG

< 3 ≤


ATCG

< 20 ≤


ATCG

< 29 ≤


ATCG

< 34 ≤


ATCG

< 41 ≤


ATCG