New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 392468	23 (0.120)	52 (0.260)	23/174	18.3	0.81	intergenic (‑116/+27)	RCAP_rcc00363/trmD	hypothetical protein/tRNA (guanine‑N1)‑methyltransferase
	?	NC_014034	2880583 =	2 (0.010)					coding (1002/1053 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase
Rejected: Position hash score below cutoff.

GTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGCCCCC..GGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATT  >  NC_014034/392368‑392568                                                                                                          |                                                                                                         gTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGCCCCc..ggcgg                                                                                                          >  1:3116561/1‑101 (MQ=255) gTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGCCCCc..ggcgg                                                                                                          >  1:634054/1‑101 (MQ=255)   cACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGCCCCC..GGCgggg                                                                                                        >  1:2018697/1‑100 (MQ=255)         gcAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGACTCAAATAT.CCCGGGGGTCC.CGGGGCGGAGCCCCC..GGCGGGGCgagtt                                                                                                  >  2:683634/1‑97 (MQ=25)          ggagtctgcgCGGCCAAAGCGGGGGGGACAGTGCCAGCCTATTTCA.CCTACCCTTAAATCC.CCCGGGGGGCG.GGGGGCGGGCCCCCC..GGCGGGTCGCCTCg                                                                                                 <  2:2054715/92‑1 (MQ=255)           aaGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGCCCCC..GGCgggggggcgcgg                                                                                                >  1:3204842/1‑92 (MQ=255)           aaGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGCAC.GGGGGGGGAGCCCCC..GGCGGGGCgtggcgg                                                                                                >  1:3273239/1‑95 (MQ=37)            aGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGCCCCC..GGCgggggggcccggg                                                                                               >  1:2324663/1‑91 (MQ=255)                ctggCGGCCCAAACCGGGGGGAAAATGGCAGGCCATTTTC.TCTTGCC.CAAAAATCCCCGGGGGGCCGGGGGGGGGACCCCCC..GGCGGGTCGCCTCGGCGCa                                                                                            <  2:534198/98‑1 (MQ=16)                 tggagccaaaaaCCGGGGGGACACGGGCCGGCTATTTCG.TCTTCCCTCAAAAGC.CCGGGGGGCCC.GGGGGCGCCCCCCCC..GGCGGGTCGCCTCGGCGCAGc                                                                                          <  1:1321046/92‑1 (MQ=12)                         ccaaCCGGGGGGGCAACGTGCGGCCCTTTTATTCTTGCCTAAAATGC.CCGGGGGGTCG.GGGGGGAGGCCCCCC..GGCGGGTCGCCTCGGCGCAGCCG.AGGCg                                                                                  <  2:2945227/99‑1 (MQ=9)                                                        atcgtccccaaaaTAC.CCGGGGGGCCG.GGGGGCGGGCCCCCC..GGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATcc                                                <  2:2169086/91‑1 (MQ=21)                                                            tGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGCCCCC..GGCGGGGGGCCCCCGCGCCGGCC.GCGCGGAAACACCTGTCG.AACCTCC.CCCCC.ACAACCCgcc                                            >  2:2886642/1‑101 (MQ=2)                                                            tGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGCCCCC..GGCGGGGCGGCCCCGCGCCGCCGCGGGGGAAAACCCTTCCCGCAACTTCC.CCCCC.aacccagc                                              >  2:2883971/1‑95 (MQ=2)                                                                     aaaccccGGGGGGCC.GGGGGGGGGGCCCCCCGGGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGt                                      <  2:633986/97‑1 (MQ=25)                                                                      at.CCCGGGGGTCC.GGGGGCGGAGCCCCC..GGCGGGGTGGCCCGGCGCCGCCG.CGGGGGAAAAACCTCACG.AAACTCT.CCCACAAAAACCGCccgccgccccc                                   >  2:1290965/1‑96 (MQ=2)                                                                       t.CCCGGGGGTCC.GGGGGCGGAGCCCCC..GGCGGGGGGCCCCGGGGCGGCCC.CGGGGGAAACAAATGCCG.AAATTCTCCCCCC.AAACCCGCCCCCCGGCcccc                                  >  1:224692/1‑100 (MQ=2)                                                                       accccGGGGGGCG.GGGGGGGGGGCCCCCCGGGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTcc                                    <  2:3204613/99‑1 (MQ=25)                                                                          gggggggGCG.GGGGGGGGCCCCCCGG.GGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCcgcg                                <  1:705137/99‑1 (MQ=25)                                                                             ggggTCC.GGGGGCGGAGCCCCC..GGCGGGGGGCCTCCGCGCAGGCC.CGCGGGAAACACTTGCCC.CACCCCT.CCCCC.AAAACCCGCCCCCCGGCCcgccccca                            >  2:3856438/1‑96 (MQ=9)                                                                                      gggggggccccccc..GGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGc                    <  2:3579922/92‑1 (MQ=255)                                                                                      ggggCGGAGCCCCC..GGCGGGGCGCCTCCGCGCCGCCC.CGGCGGAAACACATCCCC.CACTTCT.TCCCC.CAACACCCCCCCCGGCCCCGCGCCCAAACTTCGc                    >  2:2568836/1‑101 (MQ=255)                                                                                        gggggccccccg..GGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGctc                  <  1:2128352/94‑1 (MQ=255)                                                                                          cGGAGCCCCC..GGCGGGGCGCCCCGGCGCCGCCC.GGGCGGAAACACTTTCCG.AACTTCT.CCCCC.AAATCCCCCCCCCCGGCCCCCGCCCCAGCTTCGccctc                >  2:4445110/1‑100 (MQ=255)                                                                                               ccccg..GGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTc           <  2:2749518/101‑1 (MQ=255)                                                                                                cccc..GGCGGGCCCCCTCGGCGCAGCCG.AGGCGATATCTCTTGCCG.AACTTCC.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTcg          <  1:3814161/101‑1 (MQ=38)                                                                                                  gccgggcggGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTcg          <  1:4402449/97‑1 (MQ=255)                                                                                                       gcggGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCgccgcc     <  1:4136366/101‑1 (MQ=255)                                                                                                        cggGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCa    >  2:79472/1‑101 (MQ=255)                                                                                                         gggTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCAt   >  1:3637505/1‑101 (MQ=255)                                                                                                          ggTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCAtt  >  2:3696878/1‑101 (MQ=255)                                                                                                          |                                                                                                         GTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGCCCCC..GGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATT  >  NC_014034/392368‑392568 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG