New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1901208	28 (0.130)	2 (0.010)	2/186	34.9	0.02	coding (608/762 nt)	RCAP_rcc01757	phytoene synthase
	?	NC_014034	= 3005495	213 (0.940)					coding (681/942 nt)	trxB	thioredoxin‑disulfide reductase
Rejected: Position hash score below cutoff.

CGGCTGACGCTGGCGGGGGCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTGGCGGCGCTGAGCGGCTGGCAGGCCGCGGCGGTGTTGCACCGCGCGGCGGCCGCGCCCGAGCGGATCGCGGCGGGGGCCCTGC  >  NC_014034/1901108‑1901306                                                                                                     |                                                                                                   cggcTGACGCTGGCGGGGGCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGcccc                                                                                                    <  2:974229/101‑1 (MQ=255)  ggcTGACGCTGGCGGGGGCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGccccc                                                                                                   <  2:206514/101‑1 (MQ=255)  ggcTGACGCTGGCGGGGGCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGccccc                                                                                                   <  1:3763029/101‑1 (MQ=255)  ggcTGACGCTGGCGGGGGCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGccccc                                                                                                   <  1:252683/101‑1 (MQ=255)   gcTGACGCTGGCGGGGGCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGGCCTGCGGGCGGCCCccg                                                                                                  >  1:567939/1‑101 (MQ=255)   gcTGACGCTGGCGGGGGCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCccg                                                                                                  <  2:2685594/101‑1 (MQ=255)   gcTGACGCTGGCGGGGGCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCccg                                                                                                  >  1:1270150/1‑101 (MQ=255)    cTGACGCTGGCGGGGGCGACGCCTGACGCGCTGGCGTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCccgc                                                                                                 <  2:1786234/101‑1 (MQ=255)    cTGACGCTGGCGGGGGCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCccgc                                                                                                 <  2:58560/101‑1 (MQ=255)     tGACGCTGGCGGGGGCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCccgcc                                                                                                <  1:2930880/101‑1 (MQ=255)      gACGCTGGCGGGGGCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCccgccg                                                                                               <  2:2842020/101‑1 (MQ=255)       aCGCTGGCGGGGGCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCgg                                                                                              <  2:3415250/101‑1 (MQ=255)          cTGGCGGGGGCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGgc                                                                                           <  1:1894857/101‑1 (MQ=255)             gCGGGGGCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGcgcg                                                                                        <  1:579142/101‑1 (MQ=255)              cGGGGGCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCgg                                                                                       <  2:4079156/101‑1 (MQ=255)               gggggCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGc                                                                                      >  1:2382436/1‑101 (MQ=255)               gggggAGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCCGCCCCCGCCGGGGCGCCGc                                                                                      >  2:1416133/1‑101 (MQ=255)                 gggCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCTTGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTg                                                                                    <  2:3850281/101‑1 (MQ=255)                 gggCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTg                                                                                    <  2:1270057/101‑1 (MQ=255)                 gggCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTg                                                                                    <  2:3512527/101‑1 (MQ=255)                 gggCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTg                                                                                    <  2:2382286/101‑1 (MQ=255)                   gCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTggc                                                                                  <  2:358817/101‑1 (MQ=255)                   gCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTggc                                                                                  <  1:1724338/101‑1 (MQ=255)                   gCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTggc                                                                                  <  1:2406502/101‑1 (MQ=255)                      actccTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCCGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTggcggc                                                                               <  2:745367/98‑1 (MQ=255)                       cGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCACGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTGgcggcg                                                                              <  2:2273412/101‑1 (MQ=255)                       cGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTGgcggcg                                                                              <  2:3419931/101‑1 (MQ=255)                           tGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTGGCGGCGCTGa                                                                          <  1:1708734/101‑1 (MQ=255)                               gcgcTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTGGCGGCGCTGAGCgg                                                                      <  2:4158457/101‑1 (MQ=255)                                cgcTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTGGCGGCGCTGAGCGGc                                                                     >  1:2372303/1‑101 (MQ=255)                                  cTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTGGCGGCGCTGAGCGGCTg                                                                   <  2:2372153/101‑1 (MQ=255)                                  cTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTGGCGGCGCTGAGCGGCTg                                                                   <  2:567887/101‑1 (MQ=255)                                  cTGGCCTTGCTGGCGCGNGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTGGCGGCGCTGAGCGGCTg                                                                   <  2:408752/101‑1 (MQ=255)                                     gctttGCTGGCGCGTGGCGGCGCGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTGGCGGCGCTGAGCGGCTGGCa                                                                <  1:1572148/98‑1 (MQ=255)                                     gCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTGGCGGCGCTGAGCGGCTGGCa                                                                <  1:2907093/101‑1 (MQ=255)                                           cTGGCGCGGGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTGGCGGCGCTGAGCGGCTGGCAGGCcgc                                                          <  1:1416240/101‑1 (MQ=255)                                                      cggcacggcGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTGGCGGCGCTGAGCGGCTGGCAGGCCGCGGCGGTGTTGc                                               <  1:4283280/101‑1 (MQ=255)                                                                                   cGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTGGCGGCGCTGAGCGGCTGGCCGGCCGCGGGGGTGTTGCACCGCGCGGCGGCCGCGCCCCCGCGGGTc                  >  1:2660824/1‑101 (MQ=255)                                                                                   cGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTGGCGGCGCTGAGCGGCTGGCAGGCCGCGGCGGTGTTGCACCGCGCGGCGGCCGCGCCCGAGCGGATc                  <  2:2660652/101‑1 (MQ=255)                                                                                                   ccccGCCGGGGCGCGGCTGGCGGCGCTGAGCGGCTGGCAGGCCGCGGCGGTGTTGCACCGCGCGGCGGCCGCGCCCGAGCGGATCGCGGCGGGGGGCCCgc  >  1:1638310/1‑101 (MQ=255)                                                                                                     |                                                                                                   CGGCTGACGCTGGCGGGGGCGACGCCTGACGCGCTGGCCTTGCTGGCGCGTGACGGCACGGCGCGGCTGCATGCGGCGCAAGCGGCCCTGCGGGCGGCCCCCGCCGGGGCGCGGCTGGCGGCGCTGAGCGGCTGGCAGGCCGCGGCGGTGTTGCACCGCGCGGCGGCCGCGCCCGAGCGGATCGCGGCGGGGGCCCTGC  >  NC_014034/1901108‑1901306 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 38 ≤  ATCG