New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 3214783	NA (NA)	80 (0.430)	61/164	5.1	0.99	intergenic (‑39/+19)	dctQ3/dctP3	TRAP C4‑dicarboxylate transport system permease subunit DctQ/TRAP C4‑dicarboxylate transport system permease subunit DctP
	?	NC_014034	3214784 =	2 (0.010)					intergenic (‑40/+18)	dctQ3/dctP3	TRAP C4‑dicarboxylate transport system permease subunit DctQ/TRAP C4‑dicarboxylate transport system permease subunit DctP
Rejected: Position hash score below cutoff.

GTCGCCGTCGCGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCG  >  NC_014034/3214683‑3214841                                                                                                     |                                                                               gtcgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGaaagggaaaggg                                                                                <  2:780883/101‑1 (MQ=255) gtcgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGaaagggaaaggg                                                                                >  1:468081/1‑101 (MQ=255) gtcgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGaaagggaaaggg                                                                                <  2:3413522/101‑1 (MQ=255) gtcgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGaaagggaaaggg                                                                                <  2:1871994/101‑1 (MQ=255) gtcgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGaaagggaaaggg                                                                                <  1:3404828/101‑1 (MQ=255)  tcgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........c                                                                     <  1:1412331/101‑1 (MQ=255)  tcgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........c                                                                     >  1:1856924/1‑101 (MQ=255)   cgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGGTGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cg                                                                    <  1:92445/101‑1 (MQ=255)   cgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cg                                                                    <  2:1392304/101‑1 (MQ=255)   cgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cg                                                                    >  1:1516859/1‑101 (MQ=255)   cgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cg                                                                    <  2:2041435/101‑1 (MQ=255)    gccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cg..........g                                                         <  2:148776/101‑1 (MQ=255)    gccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cg..........g                                                         <  1:2364369/101‑1 (MQ=255)     ccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cg..........gc                                                        <  1:357662/101‑1 (MQ=255)      cgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGg..........cg..........gcg                                                       >  1:3011735/1‑101 (MQ=255)      cgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGg..........cg..........gcg                                                       >  2:78658/1‑101 (MQ=255)      cgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGGGGAAGGAAAGGGAAAGGg..........cg..........gcg                                                       >  2:763486/1‑101 (MQ=255)       gtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........gcgc                                                      >  2:4150967/1‑101 (MQ=255)        tcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........Gcgcc                                                     <  2:2504808/101‑1 (MQ=255)         cgcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........Gcgccg                                                    <  2:2341107/101‑1 (MQ=255)         cgcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........Gcgccg                                                    >  1:3274977/1‑101 (MQ=255)         cgcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........Gcgccg                                                    >  1:2800059/1‑101 (MQ=255)         cgcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........Gcgccg                                                    <  2:3301385/101‑1 (MQ=255)         cgcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........Gcgccg                                                    <  2:1656937/101‑1 (MQ=255)         cgcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........Gcgccg                                                    <  1:2327273/101‑1 (MQ=255)          gcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........Gcgccgc                                                   >  2:1045577/1‑101 (MQ=255)           cgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........Gcgccgtc                                                  >  2:2584602/1‑99 (MQ=255)           cgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........Gcgccgtc                                                  >  2:2975991/1‑99 (MQ=255)           cgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........Gcgccgtc                                                  <  1:1249649/101‑3 (MQ=255)           cgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........Gcgccgtc                                                  <  1:3745968/101‑3 (MQ=255)            gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........gcgcggtcc                                                 <  1:3070576/101‑6 (MQ=255)            gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtcc                                                 <  1:223051/101‑1 (MQ=255)            gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtcc                                                 <  2:1500574/101‑1 (MQ=255)             aTGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtccg                                                >  2:1941379/1‑101 (MQ=255)              tGAGCGTGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtccgg                                               <  1:725712/101‑2 (MQ=255)              tGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtccgg                                               >  1:2392708/1‑100 (MQ=255)               gAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtccggc                                              >  2:1139681/1‑99 (MQ=255)               gAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtccggc                                              <  2:462946/101‑3 (MQ=255)               gAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtccggc                                              >  1:943443/1‑99 (MQ=255)               gAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtccggc                                              <  2:3447324/101‑3 (MQ=255)                  gaccgCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCACGGCGGCCCCCTCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtccggcgcc                                           <  2:2263338/97‑6 (MQ=255)                  cgcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtccggcgcc                                           <  2:2479560/101‑6 (MQ=255)                  cgcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtccggcgcc                                           <  1:3044627/101‑6 (MQ=255)                  cgcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtccggcgcc                                           <  1:2607656/101‑6 (MQ=255)                  cgcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtccggcgcc                                           <  2:4335127/101‑6 (MQ=255)                  cgcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtccggcgcc                                           <  2:914988/101‑6 (MQ=255)                   gcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtccggcgccg                                          <  2:4914/101‑7 (MQ=255)                   gcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtccggcgccg                                          <  1:2466429/101‑7 (MQ=255)                    cgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtccggcgccgc                                         >  1:947494/1‑94 (MQ=255)                    cgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtccggcgccgc                                         >  2:154462/1‑94 (MQ=255)                     ggCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtccggcgccgcc                                        <  2:1667979/101‑9 (MQ=255)                      gCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtccggcgccgccc                                       <  2:876139/101‑10 (MQ=255)                       cAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGccgtccggcgccgcccg                                      <  2:3674842/101‑11 (MQ=255)                                                     tGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCG..........GCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGAc                  >  2:2586163/1‑101 (MQ=255)                                                         cagcaTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCG..........GCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGAcggcg              >  1:1397673/1‑101 (MQ=255)                                                         cagcaTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGTGCCGACCCGCGCCGCCCGCAGGTCTTATTCCGCCTTCGCGGCCTTGAcggcg              >  2:1325116/1‑101 (MQ=255)                                                            caTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCG..........GCGCCGCCCGCAGGGCTTATTCCGCCGTCGCGGCCTTGACGgcggcg           >  1:2658628/1‑101 (MQ=255)                                                            caTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCG..........GCGCCGCCCGCAGGACTTATTCCGCCGTCGCGGCCTTGACGgcggcg           >  2:2416682/1‑101 (MQ=255)                                                              tGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCG..........GCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCAGGGAt         >  1:718704/1‑101 (MQ=255)                                                               ggcggcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCG..........GCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATg        >  2:4438918/1‑101 (MQ=255)                                                                 cggcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGGGGCGCCGGCCG..........GCGCCGCCCGCAGGTCTTATTCTGCCGTCGCGGCCTTGACGGCGGCGTTGGt      >  2:2219092/1‑101 (MQ=255)                                                                 cggcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCG..........GCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGt      >  2:692380/1‑101 (MQ=255)                                                                  ggcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCG..........GCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGtt     >  1:2442742/1‑101 (MQ=255)                                                                   gcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCG..........GCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGgtt    >  2:1075342/1‑101 (MQ=255)                                                                    cccccGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCG..........GCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGtttt   >  2:2568082/1‑100 (MQ=255)                                                                     ccccGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCG..........GCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCg  >  2:1121615/1‑101 (MQ=255)                                                                     ccccGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCG..........GCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGACGGCGATGGGTTCg  >  1:3850799/1‑101 (MQ=255)                                                                                                     |                                                                               GTCGCCGTCGCGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CG..........GCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCG  >  NC_014034/3214683‑3214841 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG