New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744688	39 (0.200)	16 (0.080)	12/172	24.4	0.44	intergenic (+73/+139)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	= 974293	1 (0.000)					intergenic (+173/+86)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
Rejected: Position hash score below cutoff.

CATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGA  >  NC_014034/744588‑744786                                                                                                     |                                                                                                   cATGATCTTCCCGCCGGTGACGGCCTGAGATTTCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTg                                                                                                    <  2:2428133/101‑1 (MQ=255)  aTGTTCTTTCCGCCGGTGGCGCCCTGAGATTCCGCCCGGGGCGCGCTTGCCCCTGGGGCGCCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTgg                                                                                                   <  1:67831/101‑1 (MQ=25)  aTGTTCTTCCCGCGGGGGACGGCGTGAGTTTTCGCCCGGGGCCCGCTGGCGCCTGGGGCGCCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTgg                                                                                                   <  1:2125448/101‑1 (MQ=18)   ttttttccccgcggGTGCGGGCCTGGGATTCCACCGGGGGCGCGCTGCCCCCTCGGGCAACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTggg                                                                                                  <  2:2887454/93‑1 (MQ=12)      tCTTCCCGCGGGTGGCGGCCTGAGATTTCGCCCGGGGCGCGCTGGCGCCTCGGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCa                                                                                               <  1:635542/101‑1 (MQ=25)       cTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCGCCCCCGGGCCCCCGGGATATTTGGGGCaa                                                                                              >  2:2214964/1‑101 (MQ=255)        tttCCGCCGGTGACGGCCTGAGTTTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAg                                                                                             <  1:2943723/101‑1 (MQ=255)             gccgGTGGCGGCCTGAGTTTGCGCCGGGGGCGCGCTGGCCCCGGGGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGatgaa                                                                                        <  1:1203968/101‑1 (MQ=18)             gccgGTGGCGGCCTGAGATTCCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGatgaa                                                                                        <  2:2897948/101‑1 (MQ=255)               cgggggcGGCCTGAGCTTGCGCCCGGGGCCCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGatgaaat                                                                                      <  1:3221075/95‑1 (MQ=21)                   gccGGCCGGAGTTTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAaatgaat                                                                                  <  1:2330314/99‑1 (MQ=255)                    gcgcccggagaTTCCCCCCGGGGCGCGCTTGCCCCCCGGGCGCCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAaatgaatg                                                                                 <  2:2501238/94‑1 (MQ=18)                    aCGGCCGGAGTTTCCGCCCGGGGCGCGCTTGCGCCGCGGGCGCCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAaatgaatg                                                                                 <  1:776081/101‑1 (MQ=21)                        ccTGAGTTTTCGCCGGGGGCGCGCTGGCGCCTCGGGCCCCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACtt                                                                             <  1:3051089/101‑1 (MQ=21)                        ccTGAGGTTCCGCCCGGGGCGCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACtt                                                                             <  1:2227241/101‑1 (MQ=255)                                 tCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgc                                                                    >  2:2070494/1‑101 (MQ=255)                                 ccGCCGGGGGCGCCCTCGCGCCCGGGGCGCCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgc                                                                    <  2:2486506/100‑1 (MQ=18)                                     cgggggCGCGCTTGCCCCTGGGGCCCCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgcggcg                                                                <  2:727829/99‑1 (MQ=21)                                       ggggCGCGCTCGCGCCTGGGGCGCCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGt                                                              <  2:962129/101‑1 (MQ=255)                                                          ggCGCCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTg                                           <  1:2215103/101‑1 (MQ=255)                                                             gACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCtt                                        <  1:4173630/101‑1 (MQ=255)                                                               cccGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCtttt                                      <  1:1605573/101‑1 (MQ=255)                                                                 cgccgGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATCACTTTCCGTCTGCTGCGGTACAGCCTGTCCCACCCCTGCTTTTcc                                    <  1:3984666/101‑1 (MQ=255)                                                                  gccgGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCt                                   <  1:2887413/101‑1 (MQ=255)                                                                     gggggCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTgg                                <  1:3399419/101‑1 (MQ=255)                                                                     gggggCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTgg                                >  1:2779266/1‑101 (MQ=255)                                                                      ggggCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGc                               <  1:2776080/101‑1 (MQ=255)                                                                       gttcTCCCCCCCCGTACCCCCGGGATATTTGGGGCAAGATCAAATGAATGGCTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCa                              <  1:4421664/98‑1 (MQ=38)                                                                       gggCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCa                              <  1:322634/101‑1 (MQ=255)                                                                          cTCCGCCCCCGGACCCCCTGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCaaaa                           <  2:742482/101‑1 (MQ=255)                                                                           tCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAAt                          <  1:2095845/101‑1 (MQ=255)                                                                             cGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATAc                        <  1:1452217/101‑1 (MQ=255)                                                                             cGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATAc                        <  2:1886460/101‑1 (MQ=255)                                                                             cGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATAc                        <  2:861998/101‑1 (MQ=255)                                                                              gCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACg                       <  2:485406/101‑1 (MQ=255)                                                                              gCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACg                       >  1:2030322/1‑101 (MQ=255)                                                                                 cccGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCg                    <  2:2030185/101‑1 (MQ=255)                                                                                  ccGGACCCCCGGGATATTTGGGGCAAGATGAAAGGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCgg                   <  1:3820192/101‑1 (MQ=255)                                                                                     gACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCggggg                <  2:4126948/101‑1 (MQ=255)                                                                                     gACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCggggg                <  2:2109977/101‑1 (MQ=255)                                                                                      aCCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCgggggg               <  1:2048680/101‑1 (MQ=255)                                                                                       cccccGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGt              <  2:1729936/101‑1 (MQ=255)                                                                                        ccccGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTg             <  1:4254552/101‑1 (MQ=255)                                                                                        ccccGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTg             <  1:127936/101‑1 (MQ=255)                                                                                         cccGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGc            <  1:2418486/101‑1 (MQ=255)                                                                                                  tttGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCgg   <  2:3432843/101‑1 (MQ=255)                                                                                                  tttGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCgg   <  2:3491877/101‑1 (MQ=255)                                                                                                  tttGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCgg   <  1:2395118/101‑1 (MQ=255)                                                                                                   ttGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGa  <  1:2070631/101‑1 (MQ=255)                                                                                                     |                                                                                                   CATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGA  >  NC_014034/744588‑744786 Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG