New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1253895 =	53 (0.240)	18 (0.080)	2/198	36.0	0.34	intergenic (+53/+38)	RCAP_rcc01181/hisH	hypothetical protein/imidazole glycerol phosphate synthase subunit HisH
	?	NC_014034	1721522 =	16 (0.070)					intergenic (‑417/+29)	RCAP_rcc01588/RCAP_rcc01589	GSCFA family protein/ErfK/YbiS/YcfS/YnhG family protein
Rejected: Position hash score below cutoff.

GTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.CCCGCC..GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACCTGGGCATTGAACAGTC  >  NC_014034/1721423‑1721621                                                                                                          |                                                                                                    gTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.CCCGCC..gggg                                                                                                    >  1:702706/1‑100 (MQ=255)     cAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.CCCGCC..gggggcgg                                                                                                >  2:628013/1‑96 (MQ=255)          aaCGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.CCCGCC..gggggggggggcc                                                                                           >  2:2476596/1‑91 (MQ=255)             gcgcTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.CCCGCCGGGGGCTGCGCCCCCg                                                                                          >  2:4365923/1‑101 (MQ=255)                          ccctcccGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.CCCGCC..CCGCGGGGCGCCCGCGccgcccccccccc                                                                           >  1:1610848/1‑96 (MQ=25)                             ccccGCGTCGTTTTGTTTGGGG.CCGGGCGCTGGGGGGTTTCCCCCGC.GG.CGGCCCGGGGGCCC.CCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGAt                                                                          <  2:2619071/100‑1 (MQ=2)                                cgcggctttttTTTTTGGG.CCGGCCG.CTTGGGGTTTTCCCCCCGGG.CGGCGCCGAGCCGC.CCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGAtctc                                                                       <  2:645687/93‑1 (MQ=9)                                        tttTTTTTTGG.GCGGGCCGCGTGGGGTTTTCCCCCC.GG.GCCCCCCGGGGCCACCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCAc                                                                <  1:1060187/101‑1 (MQ=255)                                            tttttGGCCCGGTCGCCTGGGGGTTCCCCCCCC.GG.CGGCGCGGAGCCGC.CCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTg                                                            <  1:2502725/101‑1 (MQ=255)                                            ttttgtg.CCCGTCCCCTTTGGGGTTTCCCCCC.GGCCTCCCCCGAGCCCC.CCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTg                                                            <  2:3745397/95‑1 (MQ=255)                                                       gtcgctggggggTTTCCGCCGC.GG.GGGCGCCGGGCCCC.CCCGCCGGGGGCTGCGCCCCCGGCCCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGcc                                                 <  1:2764243/93‑1 (MQ=255)                                                           ctggggggCTTCCCCCCC.GG.CGGCCCCGCGGCCC.CCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGAcc                                             <  1:274110/97‑1 (MQ=255)                                                               ggggATTTCGCCTC.GG.CTGCGCCGAGGCGA.CCCGCCGGGGGGTGCGCCCCCGGAGCCCCCCCCAAGAAATCAGAACACCTTTACCTCCGGGGCGACCcggg                                         >  2:2106738/1‑100 (MQ=9)                                                                           gc.GG.CGGCGGCGAGGCCC.CCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATaaa                             <  1:628081/100‑1 (MQ=37)                                                                               g.CTGCGCCGAGGCGA.CCCGCCGGGGGCTGCGCCCCCCGGCCCCCCCCCGAGATCTCAGATCCCCCTGTCCTTCGGGCCGGCCGGGCCGAGCGGGTAAAGtc                          >  2:2021796/1‑100 (MQ=12)                                                                                      gcGAGGCCC.CCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGa                    <  2:702626/100‑1 (MQ=38)                                                                                             gA.CCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATTAAGTTCCTCGACCTGGGc             <  2:2456895/101‑1 (MQ=255)                                                                                                   gccgggggCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACCTGGGCATTGa        <  1:539397/96‑1 (MQ=255)                                                                                                        gggCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCGCCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACCTGGGCATTGAACAGt   <  2:527939/101‑1 (MQ=255)                                                                                                         ggCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACCTGGGCATTGAACAGTc  <  2:3336273/101‑1 (MQ=255)                                                                                                          |                                                                                                    GTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.CCCGCC..GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACCTGGGCATTGAACAGTC  >  NC_014034/1721423‑1721621 Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG