New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1253895 =28 (0.150)25 (0.130) 7/164 27.4 0.33 intergenic (+53/+38) RCAP_rcc01181/hisH hypothetical protein/imidazole glycerol phosphate synthase subunit HisH
?NC_014034 = 2590203 73 (0.320)intergenic (‑102/‑154) glnE/RCAP_rcc02415 glutamate‑ammonia‑ligase adenylyltransferase/hypothetical protein
Rejected: Position hash score below cutoff.

GCGCCAGACTAGCCGCCGCAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CG.C.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTGACCCGGACCCGC  >  NC_014034/2590103‑2590301
                                                                                                        |                                                                                                      
gcgcCAGACTAGCCGCCGCAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CG.c.ccc                                                                                                        >  1:992639/1‑101 (MQ=255)
 cgcCAGCCTACCCGCCGCAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CG.c.ccc.c                                                                                                      <  1:2683795/101‑1 (MQ=255)
 cgcCAGACTAGCCGCCGCAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CG.c.ccc.c                                                                                                      >  1:3146320/1‑101 (MQ=255)
 cgcCAGACTAGCCGCCGCAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CG.c.ccc.c                                                                                                      <  2:3247176/101‑1 (MQ=255)
 ccccAGCCTACCCGCCGCAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CG.c.ccc.c                                                                                                      <  1:1324193/99‑1 (MQ=255)
  gcCAGACTAGCCGCCGCAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CG.c.ccc.cc                                                                                                     >  2:4047258/1‑100 (MQ=255)
  gcCAGACTAGCCGCCAAAAGCCCGGGGTCAGGGCCCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CG.c.ccc.cc                                                                                                     <  2:1794443/101‑2 (MQ=37)
  cccacccacgcccccGCAAGCCCCGGGTCAAGGCGCGCAAAGCCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CG.c.ccc.cc                                                                                                     <  2:1692633/92‑2 (MQ=37)
  cccAGACTAGCCCCCGCAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CG.c.ccc.cc                                                                                                     <  1:1438271/100‑2 (MQ=255)
    cAGACTAGCCGCCGCAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CG.c.ccc.ccgc                                                                                                   >  2:2897269/1‑98 (MQ=255)
     aGACTAGCCGCCGCAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CG.c.ccc.ccgcc                                                                                                  >  2:996062/1‑97 (MQ=255)
     aGACTAGCCGCCGCAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGAGCGG.GGGGCAG.CG.c.ccc.ccgcc                                                                                                  >  2:885674/1‑97 (MQ=255)
      gACTAGCCGCCGCAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CG.c.ccc.ccgccg                                                                                                 >  2:1334438/1‑96 (MQ=255)
        cTAGCCGCCGCAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCggg                                                                                             >  2:2588072/1‑101 (MQ=255)
         tAGCCGCCGCAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCgggc                                                                                            >  1:2103562/1‑100 (MQ=255)
         tAGCCGCCGCAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGt                                                                                            >  2:4048014/1‑101 (MQ=255)
          aGCCGCCGCAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTc                                                                                           >  2:2243959/1‑101 (MQ=255)
          aGCCGCCGCAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTc                                                                                           >  2:1331730/1‑101 (MQ=255)
             cgccgcAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGGGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGACGcc                                                                                        >  2:777501/1‑101 (MQ=38)
              gccgcAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCt                                                                                       >  2:4118466/1‑101 (MQ=255)
              gccgcAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCt                                                                                       >  2:3177072/1‑101 (MQ=255)
                cgcAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCTTCg                                                                                     >  1:2351424/1‑101 (MQ=255)
                cgcAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCg                                                                                     >  1:4037785/1‑101 (MQ=255)
                  cAAGCCCCGGGTGAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CG.CGCCC.C..G.CCGGGTCGCCTCGgc                                                                                   >  1:2421423/1‑101 (MQ=255)
                  cAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGgc                                                                                   >  2:2381382/1‑101 (MQ=255)
                       cccGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAg                                                                              >  2:29385/1‑101 (MQ=255)
                         cGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGcc                                                                            >  2:312750/1‑101 (MQ=255)
                         cGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.CGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGcc                                                                            >  1:3103559/1‑101 (MQ=255)
                           ggTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCCAGCCGa                                                                          >  1:3057874/1‑101 (MQ=255)
                               aaGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CG.C.CCCTC..G.CCGGGTCCCCTCGGCGCAAGCCGAGGCg                                                                      >  1:296209/1‑101 (MQ=255)
                               aaGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGCGCGG.GGGGCTG.CGCC.CCC.C..G.CCGGGGCGGCCCGGCGCCAGCCGAGGCg                                                                      >  1:835130/1‑101 (MQ=255)
                                aGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGa                                                                     >  2:541429/1‑101 (MQ=255)
                                 ggCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGaa                                                                    >  2:3288174/1‑101 (MQ=255)
                                   cgcgcAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAAt                                                                  >  2:3941378/1‑101 (MQ=255)
                                   cgcgcAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCCCGGCGCCAGCCGAGGCGaaaa                                                                  >  1:11513/1‑100 (MQ=38)
                                        aaaTGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCACGCCGAGGCGAAAtctctc                                                             >  1:1756131/1‑101 (MQ=255)
                                        aaaTGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAAtctctc                                                             >  2:117111/1‑101 (MQ=255)
                                          aTGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGGAG.CGCC.CCC.C..G.CCGGGGCGCCTCGGCGCAAGCCGCGGCGAAATCTTTccc                                                           >  2:3044332/1‑101 (MQ=25)
                                          aTGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTccc                                                           >  2:3611280/1‑101 (MQ=255)
                                              cccgccccTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGAc                                                       >  1:2790897/1‑101 (MQ=255)
                                               ccgccccTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGCGGCGAAATCTCTcccccccc                                                      >  1:3075744/1‑97 (MQ=37)
                                               ccgccccTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGAcc                                                      >  1:1841028/1‑101 (MQ=255)
                                                 gccccTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGAcccc                                                    >  2:1875895/1‑101 (MQ=255)
                                                   cccTGTCATCTTGGCGCGAATATCCCGGGGGGTGGGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGGCGAGGCGAAATCTCTCCCCGACCCCtt                                                  >  1:3680547/1‑101 (MQ=38)
                                                   cccTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCtt                                                  >  1:2063192/1‑101 (MQ=255)
                                                   cccTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCtt                                                  >  1:1470856/1‑101 (MQ=255)
                                                   cccTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCtt                                                  >  2:3610189/1‑101 (MQ=255)
                                                    ccTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTg                                                 >  1:1991355/1‑101 (MQ=255)
                                                    ccTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTg                                                 >  1:244043/1‑101 (MQ=255)
                                                     cTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTgc                                                >  1:375968/1‑101 (MQ=255)
                                                     cTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTgc                                                >  1:98730/1‑101 (MQ=255)
                                                        tCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTgcggc                                             >  1:3513509/1‑101 (MQ=255)
                                                         cATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTgcggcg                                            >  2:1468128/1‑101 (MQ=255)
                                                         cATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTgcggcg                                            >  2:4213324/1‑101 (MQ=255)
                                                           tcatGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCCCCCCGACCCCTTGCGGCGCa                                          >  1:2553786/4‑101 (MQ=37)
                                                           tCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGCCCCCttcccgccca                                          >  2:2503653/1‑93 (MQ=25)
                                                           tCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCa                                          >  2:1444734/1‑101 (MQ=255)
                                                            cTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCGCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGgcgcca                                         >  2:2616938/1‑99 (MQ=255)
                                                             ttGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAAt                                        >  2:4203286/1‑101 (MQ=255)
                                                              tGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATg                                       >  1:2387437/1‑101 (MQ=255)
                                                                gctgaactcccccGGGGGGCGCGG.GGCCTCC.CC.C.CCC.C..GTCCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTa                                     <  2:778601/91‑1 (MQ=21)
                                                                gcgcGAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTa                                     >  2:3574719/1‑101 (MQ=255)
                                                                 cgcgAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTaa                                    >  1:1714135/1‑101 (MQ=255)
                                                                   cgAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTaaaa                                  >  2:2857024/1‑101 (MQ=255)
                                                                   cgAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTaaaa                                  >  1:3181704/1‑101 (MQ=255)
                                                                    gAATATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTaaaaa                                 >  2:646233/1‑101 (MQ=255)
                                                                     aaTATCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCCATGTAAAAAt                                >  2:3143698/1‑101 (MQ=255)
                                                                      atatCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATc                               >  2:2328178/1‑101 (MQ=255)
                                                                        atCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCtt                             >  2:374158/1‑101 (MQ=255)
                                                                         tCCCGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCttt                            >  1:1550771/1‑101 (MQ=255)
                                                                         gcggggggggGGGGG.GGGCCCC.CC.C.CCC.C..GCCCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCttt                            <  1:510940/97‑1 (MQ=25)
                                                                         agcgggggggGGCGGTGGGGCCGCCC.C.CCC.C..GCCCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCt                              <  2:2111375/97‑1 (MQ=25)
                                                                           ccGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTca                          >  1:4033301/1‑101 (MQ=255)
                                                                            cGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCCAGCCGAGGCGAAATCTCTCCCCGACCCCCTGCGGCGCAATGTAAAAATCTTTcac                         >  2:1636739/1‑101 (MQ=37)
                                                                            cGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTcac                         >  1:1056543/1‑101 (MQ=255)
                                                                            cGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTcac                         >  2:2384747/1‑101 (MQ=255)
                                                                            cGGGGGGTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTcac                         >  1:933287/1‑101 (MQ=255)
                                                                              tcgggGGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCTACCCCTTGCGGCGCAATGTAAAAATCTTTCACAt                       <  2:3971959/99‑1 (MQ=38)
                                                                                 ggTGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCTACCCCTTGCGGCGCAATGTAAAAATCTTTCACAtaga                    >  1:3972215/1‑98 (MQ=38)
                                                                                   tGCGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGCAATCTCTCCCCCACCCCCTGCGGCGCACTGTAAAAATCTTTCACATccccc                  >  1:937039/1‑100 (MQ=38)
                                                                                   cgggg.ggggCGG.CCCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCct                  <  1:1331827/98‑1 (MQ=38)
                                                                                    gCGG.GGGGCCG.CC.C.CCC.CCGG.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCct                  <  2:1412873/101‑1 (MQ=38)
                                                                                     cGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCctct                >  1:894547/1‑101 (MQ=255)
                                                                                     cGG.GGGGCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCctct                >  2:2176076/1‑101 (MQ=255)
                                                                                      gg.ggggCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCtt               >  1:3579138/1‑101 (MQ=255)
                                                                                       g.ggggCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCCAGCCGAGGCGAAATCTCTCCCCGACCCCCTGCGGCGGCATGTAAAAATCTTTTACATCCCCCCttt              >  1:1626936/1‑100 (MQ=25)
                                                                                         ggggCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTga             >  2:4221913/1‑101 (MQ=255)
                                                                                         ggggCAG.CGCC.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTga             >  2:600649/1‑101 (MQ=255)
                                                                                           ggccgccccc.ccc.c..C.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTgac            <  2:3533836/92‑1 (MQ=38)
                                                                                           cccccccccc.ccc.c..C.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTgac            <  2:1714024/92‑1 (MQ=38)
                                                                                            ccccccccc.ccc.g..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTgacc           <  2:4033044/93‑1 (MQ=255)
                                                                                              ctgtgcc.ccc.c..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTgacccg         >  2:1059063/7‑101 (MQ=255)
                                                                                               agcgcc.ccc.c..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTgacccgg        >  1:1646536/6‑101 (MQ=255)
                                                                                                gcgcc.ccc.c..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTgacccgga       >  1:2563650/5‑101 (MQ=255)
                                                                                                 cgcc.ccc.c..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTgacccggac      >  2:3077791/4‑101 (MQ=255)
                                                                                                  gcc.ccc.c..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTgacccggacc     >  2:2456308/3‑101 (MQ=255)
                                                                                                   cc.ccc.c..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTgacccggaccc    <  1:1444841/100‑1 (MQ=255)
                                                                                                      ccc.c..G.CCGGGTCCCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTGACCCGGACCcgc  <  1:3611528/101‑1 (MQ=255)
                                                                                                        |                                                                                                      
GCGCCAGACTAGCCGCCGCAAGCCCCGGGTCAAGGCGCGCAAATGCCCCGCCCCTGTCATCTTGGCGCGAATATCCCGGGGGGTGCGG.GGGGCAG.CG.C.CCC.C..G.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTGACCCGGACCCGC  >  NC_014034/2590103‑2590301

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG