New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1397903 =144 (0.980)47 (0.320) 3/130 27.2 0.30 intergenic (+207/+1691) RCAP_rcc01307/RCAP_rcc01309 hypothetical protein/IS66 family transposase
?NC_014034 = 1434446 80 (0.350)intergenic (‑225/‑733) RCAP_rcc01334/RCAP_rcc01335 hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator
Rejected: Position hash score below cutoff.

Only 100 of 185 total aligned reads displayed.

CTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGA  >  NC_014034/1434346‑1434509
                                                                                                        |                                                               
ctgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAac                                                                 <  1:3205421/101‑1 (MQ=255)
  gggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacac                                                               >  1:3984401/1‑101 (MQ=255)
   ggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACg                                                              >  1:2567861/1‑101 (MQ=255)
    gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacg                                                                <  1:248053/101‑2 (MQ=2)
    gTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACgg                                                             >  2:2135634/1‑101 (MQ=255)
    gTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACgg                                                             <  1:928347/101‑1 (MQ=255)
     tCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgc                                                               >  2:1881234/1‑99 (MQ=2)
     tCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGa                                                            <  1:1685690/101‑1 (MQ=255)
      ctcTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAt                                                           <  2:328003/99‑1 (MQ=255)
      cGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgct                                                              <  1:1963134/101‑4 (MQ=2)
      cGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgct                                                              <  1:3255038/101‑4 (MQ=2)
       gCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctg                                                             >  2:3879670/1‑97 (MQ=2)
       gCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctg                                                             <  1:2619103/101‑5 (MQ=2)
       gCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAtt                                                          <  2:3320120/101‑1 (MQ=255)
       gCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAtt                                                          >  1:610430/1‑101 (MQ=255)
        cTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgc                                                            <  2:3879206/101‑6 (MQ=2)
        cTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgc                                                            <  2:1234944/101‑6 (MQ=2)
        cTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgc                                                            <  1:2454522/101‑6 (MQ=2)
         tCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGc                                                        <  1:697272/101‑1 (MQ=255)
          ccccccGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCa                                                       >  2:908868/1‑101 (MQ=255)
           cccccGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCAt                                                      <  1:2610500/101‑1 (MQ=255)
           cccccGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCAt                                                      <  2:4002554/101‑1 (MQ=255)
           cccccGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCAt                                                      <  2:1798100/101‑1 (MQ=255)
             cccGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgctgaca                                                       <  1:542129/101‑11 (MQ=0)
             cccGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgctgaca                                                       >  1:475795/1‑91 (MQ=0)
             cccGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAacgctgctgaca                                                       >  2:3253945/1‑91 (MQ=0)
              ccGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGgc                                                   <  2:4382173/101‑1 (MQ=255)
              ccGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGgc                                                   >  1:4056004/1‑101 (MQ=255)
                gcgGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGgcgc                                                 >  1:112119/1‑101 (MQ=255)
                 cgGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGcc                                                <  2:3516399/101‑1 (MQ=255)
                 cgGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGcc                                                >  1:916345/1‑101 (MQ=255)
                 cgGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGcc                                                <  1:1063213/101‑1 (MQ=255)
                    gggCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAGCACGGATTGCATGGCGCCGAg                                             <  1:3292247/101‑1 (MQ=255)
                    gggCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAg                                             >  1:830453/1‑101 (MQ=255)
                       cGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGa                                          <  2:2050301/101‑1 (MQ=255)
                       cGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGa                                          <  1:2729583/101‑1 (MQ=255)
                       cGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGa                                          >  1:2171886/1‑101 (MQ=255)
                       cGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGa                                          >  1:1287111/1‑101 (MQ=255)
                        gTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGAc                                         <  2:1205490/101‑1 (MQ=255)
                         tctaTCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACa                                        <  1:3405536/98‑1 (MQ=255)
                         tGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGAcc                                        >  2:2911092/1‑100 (MQ=255)
                         tGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACa                                        <  2:1548467/101‑1 (MQ=255)
                          ggATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAg                                       <  2:2354906/101‑1 (MQ=255)
                          ggATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAg                                       >  2:3045302/1‑101 (MQ=255)
                            aTCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACaaga                                     >  2:3405299/1‑98 (MQ=255)
                              cGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCtt                                   >  2:677295/1‑101 (MQ=255)
                              cGAAAC..CGCCCCGGTCTTGTTCCCG.GCCTGCGCCACCCTTGT.GCCCCCCCCCGGGGGGGGGGGGTCGAAACCCGGATTGCATGGCGCCGAGGGACAGGCtt                                   <  1:1929593/101‑1 (MQ=2)
                                aaaC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCtttc                                 >  1:3135624/1‑100 (MQ=255)
                                aaaC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTg                                 <  2:111768/101‑1 (MQ=255)
                                aaaC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTg                                 >  1:102042/1‑101 (MQ=255)
                                 aaC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGc                                >  2:4228079/1‑101 (MQ=255)
                                 aaC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGc                                <  1:1085697/101‑1 (MQ=255)
                                 aaC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGc                                >  1:768777/1‑101 (MQ=255)
                                      gTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGTGCCGAGGGACAGGCTTTGCAgg                             >  2:2425139/1‑100 (MQ=255)
                                      gTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGt                             >  1:3355969/1‑101 (MQ=255)
                                        ctcCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCg                           <  2:2935751/101‑1 (MQ=255)
                                         tcCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGc                          <  2:3982601/101‑1 (MQ=255)
                                         tcCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGc                          >  1:1628774/1‑101 (MQ=255)
                                          ccGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCt                         <  2:2474479/101‑1 (MQ=255)
                                           cGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTc                        >  2:514628/1‑101 (MQ=255)
                                            gCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcc                       >  2:3746879/1‑101 (MQ=255)
                                            gCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTCGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcc                       <  1:4378314/101‑1 (MQ=255)
                                              tctGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGGAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccc                     >  1:2063454/1‑101 (MQ=255)
                                              tctGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccc                     >  1:389516/1‑101 (MQ=255)
                                              tctGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccc                     <  1:173807/101‑1 (MQ=255)
                                               ctGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTccccc                    >  1:361596/1‑101 (MQ=255)
                                                tGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccccc                   <  1:2240912/101‑1 (MQ=255)
                                                tGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccccc                   <  1:659365/101‑1 (MQ=255)
                                                 gCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCcg                  >  1:4169319/1‑101 (MQ=255)
                                                 gCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACACGCTTTGCAGTCGCTtcccccc                  >  2:1833928/1‑100 (MQ=255)
                                                  cTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCcgc                 >  2:3615859/1‑101 (MQ=255)
                                                  cTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCcgc                 >  1:2068314/1‑101 (MQ=255)
                                                    tCACG.G.CTGCGTCACCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCgg               <  2:2971584/101‑1 (MQ=255)
                                                    tCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCgg               >  1:1608512/1‑101 (MQ=255)
                                                     cACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCTCGCggg              >  1:731717/1‑101 (MQ=255)
                                                       cG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCggggg            <  2:3403353/101‑1 (MQ=255)
                                                       cG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCggggg            >  2:575650/1‑101 (MQ=255)
                                                        g.g.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGc           >  1:734833/1‑101 (MQ=40)
                                                        g.g.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGc           <  1:3009422/101‑1 (MQ=40)
                                                        g.g.CGGCGTCAACCTTGGCCCCCCCCCGGGGGGGGCGTGGACCGAAACACGGATTGCTGGGCGCGGAGGGACGGGCTTTGCATTCGCCCCCCCCGCGGGGGc           <  2:3203405/101‑1 (MQ=9)
                                                        ctg.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCggggg            <  2:371409/99‑1 (MQ=255)
                                                            cTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGt         <  2:2700581/101‑1 (MQ=39)
                                                            cTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGt         <  2:2567698/101‑1 (MQ=39)
                                                              gCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTgg       <  1:244035/101‑1 (MQ=37)
                                                              gCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTgg       <  1:1648816/101‑1 (MQ=37)
                                                              gCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTgg       <  2:1628668/101‑1 (MQ=37)
                                                               cGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCggggggagcga      <  2:2175674/101‑7 (MQ=255)
                                                               cGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGa      <  2:837272/101‑1 (MQ=35)
                                                                gTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGAt     >  1:3732222/1‑101 (MQ=34)
                                                                gTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGAt     <  2:1491031/101‑1 (MQ=34)
                                                                gTCAACCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTAGAt     <  1:1413040/101‑1 (MQ=19)
                                                                 tCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATc    <  2:924519/101‑1 (MQ=33)
                                                                 tCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATc    <  2:4055744/101‑1 (MQ=33)
                                                                 tCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATc    <  2:141291/101‑1 (MQ=33)
                                                                  cAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGCTCg   >  2:4320002/1‑101 (MQ=17)
                                                                  cAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCg   <  1:2909214/101‑1 (MQ=32)
                                                                  cAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCg   >  1:2927481/1‑101 (MQ=32)
                                                                   aaCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGa  >  2:3106204/1‑101 (MQ=31)
                                                                   aaCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGa  <  2:2432292/101‑1 (MQ=31)
                                                                   aaCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGa  >  1:3559759/1‑101 (MQ=31)
                                                                                                        |                                                               
CTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGA  >  NC_014034/1434346‑1434509

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG