BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1608051 =	0 (0.000)	51 (0.260)	22/176	19.0	0.34	intergenic (+321/‑26)	RCAP_rcc01484/murD	hypothetical protein/UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
*	?	NC_014034	2808467 =	201 (0.890)	51 (0.260)	22/176	19.0	0.34	intergenic (+22/+132)	pyrD2/acsA2	dihydroorotate oxidase/acetate‑‑CoA ligase
Rejected: Position hash score below cutoff.

Only 100 of 236 total aligned reads displayed.


CTGGATGCGCTTTTGGCGCGCGACGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCCCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCGGGGGGAGA.GTGGCGCAG  >  NC_014034/2808368‑2808566


cTGGATGCGCTTTTGGCGCGCGACGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGgtt                                                                                                     >  2:2710759/1‑101 (MQ=255)


 tGGATGCGCTTTTGGCGCGCGACGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACACGCCCGAAGCTAC.GGGGGgtta                                                                                                    >  1:690844/1‑100 (MQ=255)


    aTGCGCTTTTGGCGCGCGACGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGgtttccc                                                                                                 >  2:1795646/1‑97 (MQ=255)


      gcgcTTTTGGCGCGCGACGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCAcacc                                                                                               >  2:2349383/1‑101 (MQ=255)


        gcTTTTGGCGCGCGACGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCAcacccc                                                                                             <  1:3514962/101‑1 (MQ=255)


         cTTTTGGCGCGCGACGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCAcaccccc                                                                                            <  1:1157208/101‑1 (MQ=255)


         cTTTGGGCGCGCGACGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCAcaccccc                                                                                            <  1:738288/101‑1 (MQ=255)


          ttttGGGGCGGGACGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCGCCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCAcacccccg                                                                                           <  1:2630911/101‑1 (MQ=38)


          ttttGGCGCGCGACGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCAcacccccg                                                                                           <  1:3665686/101‑1 (MQ=255)


          ttttGGCGCGCGACGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGGTTCAcacccccg                                                                                           >  2:3718932/1‑101 (MQ=255)


           tttGGCGCGCGACGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCAcacccccgc                                                                                          <  2:2501569/101‑1 (MQ=255)


           tttGGCGCGCGACGGCGCGGCCTCGGGGGCGGAAGCCGTGGGCCCCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCAcacccccgc                                                                                          <  1:3409880/101‑1 (MQ=25)


            ttGGCGCGCGACGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCAcacccccgcc                                                                                         >  2:1455521/1‑100 (MQ=255)


             tGGCGCGCGACGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCAcacccccgcac                                                                                        <  1:2750873/101‑1 (MQ=255)


                cgcgcgACGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGGTTCAcacccccgcacccc                                                                                     >  2:3201016/1‑101 (MQ=255)


                 gcgcgACGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCAcacccccgcaccccc                                                                                    <  2:1960009/101‑1 (MQ=255)


                  gtccaCGGTTTTGCTTCGGTGGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCAcacccccgcacccccg                                                                                   <  2:1729954/97‑1 (MQ=37)


                  cgcgACGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGGTTCAcacccccggacccccg                                                                                   >  2:4421504/1‑101 (MQ=255)


                    ccaCGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTg                                                                                 <  2:1328818/99‑1 (MQ=255)


                     gagggCTTTGCTTCGGGCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTgg                                                                                <  2:1920083/98‑1 (MQ=255)


                     gACGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTgg                                                                                >  2:2862560/1‑101 (MQ=255)


                       cGGCTTTGCTTCGGTCGGGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCg                                                                              <  1:2190406/101‑1 (MQ=255)


                       cGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCg                                                                              <  2:3025357/101‑1 (MQ=255)


                         gCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTa                                                                            <  1:2321889/101‑1 (MQ=255)


                           tttGCTTGGGCGGCGCAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCTCACCCCCGCACCCCCGTGGCGTAtt                                                                          <  2:412063/101‑1 (MQ=25)


                           tttGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCCCACCCCCGTGGCGGAtt                                                                          >  2:4305070/1‑101 (MQ=255)


                            ttGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGCGGGGGGTTTCCCACCCCCGCACCCCCGGggggagtt                                                                          >  1:3282136/1‑95 (MQ=255)


                            ttGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTAttt                                                                         <  1:256042/101‑1 (MQ=255)


                            ttGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTAttt                                                                         <  2:386958/101‑1 (MQ=255)


                             tGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCGCCCCCGTGGCGTATTTg                                                                        <  1:2873958/101‑1 (MQ=255)


                             tGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTg                                                                        <  1:2786971/101‑1 (MQ=255)


                              gCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGGTTCCCACCCCCCCACCCCCCGGGCGTATTTgc                                                                       >  1:613221/1‑101 (MQ=37)


                                 tCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGcc                                                                    <  2:2528570/101‑1 (MQ=255)


                                 tCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGGTTCACACCCCCGCACCCCCGTGGCGTATTTGCGcc                                                                    >  1:3032650/1‑101 (MQ=255)


                                  gggTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCa                                                                   <  2:813860/100‑1 (MQ=255)


                                   ggccgcgGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCaa                                                                  <  2:1290528/98‑1 (MQ=255)


                                    gccgcgGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAg                                                                 <  1:1422575/99‑1 (MQ=255)


                                    gccgcgGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAg                                                                 <  1:1095306/99‑1 (MQ=255)


                                    gTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAg                                                                 <  1:3079336/101‑1 (MQ=255)


                                    gTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGGTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAg                                                                 >  1:2701853/1‑101 (MQ=255)


                                      cgcgGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGaa                                                               <  2:682314/101‑1 (MQ=255)


                                      cgcgGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGGTTCACCCCCCCCCACCCCCCCGGCGGATTTTCGCCCAGaa                                                               >  1:1807659/1‑101 (MQ=255)


                                        gggAAGCCGTGGGCCCCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGaaaa                                                             <  1:863787/100‑1 (MQ=255)


                                        cgGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGGTTCACACCCCCGCACCCCCGGGGCGGATTTGCGCCCAGaaaa                                                             >  1:1549192/1‑101 (MQ=25)


                                         ggAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGaaaaa                                                            >  2:402782/1‑101 (MQ=255)


                                         ggAAGCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGGTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGaaaaa                                                            >  2:1664760/1‑101 (MQ=255)


                                             gCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGcac                                                        >  2:1995727/1‑101 (MQ=255)


                                             gCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGcac                                                        <  1:3783367/101‑1 (MQ=255)


                                             gCCGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGGTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGcac                                                        >  2:3499267/1‑101 (MQ=255)


                                              ccGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGcaca                                                       <  1:384714/101‑1 (MQ=255)


                                               cGTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAg                                                      >  1:4120394/1‑101 (MQ=255)


                                               cGTGGCCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAg                                                      <  1:625021/101‑1 (MQ=255)


                                                gTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGa                                                     >  1:4226167/1‑101 (MQ=255)


                                                gTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGa                                                     >  1:2672340/1‑101 (MQ=255)


                                                gTGGGCACCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGGTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGa                                                     >  2:1584172/1‑101 (MQ=255)


                                                      cccGCTCGCAGCCGCTGGTTCTGACCCGCCCGTAGCTGC.GGGTGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTg                                               <  2:3317543/100‑1 (MQ=17)


                                                      aCCGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGGTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTg                                               >  1:3016967/1‑101 (MQ=255)


                                                       ccGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGc                                              <  1:3872364/101‑1 (MQ=255)


                                                       ccGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGc                                              <  2:3822421/101‑1 (MQ=255)


                                                        cGGTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGcc                                             <  2:59148/101‑1 (MQ=255)


                                                        cGGTCGCAGCCGCTGGCGCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGcc                                             <  2:1302152/101‑1 (MQ=255)


                                                         ggTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGccc                                            <  1:2121651/101‑1 (MQ=255)


                                                          gTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCg                                           >  1:1183361/1‑101 (MQ=255)


                                                          gTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCg                                           <  2:118566/101‑1 (MQ=255)


                                                          gTCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCg                                           <  2:680751/101‑1 (MQ=255)


                                                           tCGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.TGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGt                                          <  1:3822440/101‑1 (MQ=255)


                                                            cGCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGtt                                         >  1:2728209/1‑101 (MQ=255)


                                                             gCAGCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGGTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTc                                        >  1:4164448/1‑101 (MQ=255)


                                                                gCCGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCAcc                                     <  2:2780216/101‑1 (MQ=255)


                                                                 ccGCTGGCTCGGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCAccc                                    <  2:3281904/101‑1 (MQ=255)


                                                                  tgCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCt                                   >  2:545235/2‑101 (MQ=255)


                                                                  cGCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCt                                   <  1:1638181/101‑1 (MQ=255)


                                                                   gCTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTg                                  <  2:1115180/101‑1 (MQ=255)


                                                                    cTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTgg                                 <  1:4006538/101‑1 (MQ=255)


                                                                    cTGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTgg                                 >  2:2237242/1‑101 (MQ=255)


                                                                     tGGCTCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGgc                                >  1:4300517/1‑101 (MQ=255)


                                                                         tcTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCaa                            <  1:3329612/100‑1 (MQ=255)


                                                                          cTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCaaa                           <  2:2676712/101‑1 (MQ=255)


                                                                           tGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAAt                          <  2:44991/101‑1 (MQ=40)


                                                                             aCCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAAtct                        <  1:971585/101‑1 (MQ=40)


                                                                             aCCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAAtct                        >  1:1915963/1‑101 (MQ=40)


                                                                                 gcccgTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCg                    <  1:1370179/101‑1 (MQ=39)


                                                                                   ccgTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCggg                  <  1:1790886/101‑1 (MQ=39)


                                                                                    cgTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCgggg                 >  1:2487908/1‑101 (MQ=39)


                                                                                     gTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCggggg                <  1:3212626/101‑1 (MQ=39)


                                                                                     gTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCggggg                >  1:168001/1‑101 (MQ=39)


                                                                                     gTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCggggg                >  1:4102369/1‑101 (MQ=39)


                                                                                      tAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCgggggg               <  1:280385/101‑1 (MQ=39)


                                                                                      tAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCgggggg               >  2:4160254/1‑101 (MQ=39)


                                                                                         cTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCGGGGGgaga            <  1:4332884/101‑1 (MQ=38)


                                                                                         cTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCGGGGGgaga            <  2:653778/101‑1 (MQ=38)


                                                                                            c.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCGGGGGGaga.ggt        <  1:545287/101‑3 (MQ=18)


                                                                                            c.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCGGGGGGaga.ggt        <  2:585776/101‑3 (MQ=18)


                                                                                            c.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCGGGGGGaga.ggg        >  1:437820/1‑99 (MQ=21)


                                                                                              gggggTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCGGGGGGaga.ggtg       <  2:2919264/101‑4 (MQ=17)


                                                                                               ggggTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCGGGGGGgga.ggtgg      >  2:2110546/1‑97 (MQ=9)


                                                                                                   tttCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCGGGGGGAGAGGTGGCGCa   <  1:3382779/101‑1 (MQ=2)


                                                                                                   tttCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCGGGGGGAGA.GGgggcgca  >  1:131055/1‑96 (MQ=9)


                                                                                                    ttCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCGGGGGGAGAGGTGGCGCAg  >  2:357817/1‑101 (MQ=9)


                                                                                                    ttCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCGGGGGGAGAGGTGGCGCAg  <  2:873714/101‑1 (MQ=9)


CTGGATGCGCTTTTGGCGCGCGACGGCTTTGCTTCGGTCGCGGAAGCCGTGGGCACCGGTCGCAGCCGCTGGCCCTGACCCGCCCGTAGCTGC.GGGGGTTTCACACCCCCGCACCCCCGTGGCGTATTTGCGCCAAGAAAAAGCACAGACTTTTGCCCGTTCACCCTGGCGCAAATCTCCCGGGGGGAGA.GTGGCGCAG  >  NC_014034/2808368‑2808566

Base quality scores:


ATCG

< 3 ≤


ATCG

< 18 ≤


ATCG

< 26 ≤


ATCG

< 33 ≤


ATCG

< 41 ≤


ATCG