New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1608051 =8 (0.040)23 (0.110) 2/186 34.9 0.19 intergenic (+321/‑26) RCAP_rcc01484/murD hypothetical protein/UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
?NC_014034 3504133 = 189 (0.840)intergenic (‑26/+57) recO/RCAP_rcc03309 DNA repair protein RecO/hypothetical protein
Rejected: Position hash score below cutoff.

Only 100 of 202 total aligned reads displayed.

AACACCTCGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGCCGTGCC  >  NC_014034/3504034‑3504233
                                                                                                       |                                                                                                    
aaCACCTCGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGgtt                                                                                                     >  1:686170/1‑101 (MQ=255)
  cacCTCGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGGC...GGGGGGTTTg                                                                                                   >  1:3547146/1‑101 (MQ=255)
   acCTCGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGc                                                                                                  <  1:203466/101‑1 (MQ=255)
    ccTCGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCCCG.GGGGGTTTTg                                                                                                   >  1:3707810/1‑101 (MQ=255)
       cGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAAGGGGC...GGGGGtttttggcc                                                                                               >  2:977139/1‑96 (MQ=255)
         aCAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGGC...GGGGGGTTTGCAccccc                                                                                            >  1:4242685/1‑101 (MQ=255)
         aCAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGGTTTTCAccccc                                                                                            >  1:2930431/1‑101 (MQ=255)
          cAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGGTTTGCACCCCCg                                                                                           >  2:2773457/1‑101 (MQ=255)
           aaTCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGGC...GGGGGGTTTGCACCCCCgg                                                                                          >  2:2177996/1‑101 (MQ=255)
           aaTCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCAccccccg                                                                                          >  2:2068807/1‑99 (MQ=255)
           aaTCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGGTTTGCACCCCCgg                                                                                          >  2:4269443/1‑101 (MQ=255)
           aaTCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGGGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGGC...GGGGGGTTTTCCGCCCCgg                                                                                          >  1:988613/1‑101 (MQ=255)
             tCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGc                                                                                        <  1:2836862/101‑1 (MQ=255)
              cGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCCGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGGTTTGCACCCCCGGGcc                                                                                       >  1:540885/1‑101 (MQ=255)
                ccGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGcccc                                                                                     <  1:2229963/101‑1 (MQ=255)
                  gAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCg                                                                                   <  1:712773/101‑1 (MQ=255)
                   aGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGc                                                                                  <  2:3023840/101‑1 (MQ=255)
                     gtttCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAg                                                                                <  2:3212233/100‑1 (MQ=255)
                      tttCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAgg                                                                               <  1:170897/101‑1 (MQ=255)
                      tttCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGGTTTGCACCCCCCGGccccccccgg                                                                               >  1:3687314/1‑96 (MQ=255)
                       ttCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAAGGGCCG..GGGGGTTTTGCCCCCCCGCCcccccccgg                                                                                >  1:189889/1‑97 (MQ=255)
                       ttCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCCCGGGGGGGTGTTGCCCCCCCGCCcccccccg                                                                                 >  2:3069627/1‑98 (MQ=255)
                        tCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGGTTTGCACCCCCCGGCCCCCGCAGGat                                                                             >  2:506437/1‑101 (MQ=255)
                         cGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGcggatgc                                                                            <  2:1851458/101‑7 (MQ=255)
                            cGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATAttt                                                                         <  2:92631/101‑1 (MQ=255)
                             gTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTg                                                                        <  2:1714020/101‑1 (MQ=255)
                              tGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCCCG.GGGGGTTTTGCCCCCCCGCGCCCCCCCGGGagtttt                                                                         >  2:1618973/1‑96 (MQ=255)
                                cAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAgg                                                                     <  1:1746143/101‑1 (MQ=255)
                                    cGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAg                                                                 >  2:3607824/1‑101 (MQ=255)
                                     gggTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCCGG.GGGGGTTTTACCCCCCCGGCCCCCCCCGGGATTTTTGGggaga                                                                  >  2:3781812/1‑98 (MQ=255)
                                     gggTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGa                                                                <  1:1215176/101‑1 (MQ=255)
                                     gggTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGa                                                                <  1:4268767/101‑1 (MQ=255)
                                       gTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATa                                                              <  1:1521588/101‑1 (MQ=255)
                                        tCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATaa                                                             <  2:2646518/101‑1 (MQ=255)
                                        tCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATaa                                                             >  2:2932542/1‑101 (MQ=255)
                                         cGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGCCCCCCGCAGGATATTTTAGGCAAGaacaa                                                            >  1:2651864/1‑97 (MQ=255)
                                         cGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGGTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATaaa                                                            >  1:1306325/1‑101 (MQ=255)
                                          gAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATaaaa                                                           <  2:1403294/101‑1 (MQ=255)
                                          gAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATaaaa                                                           <  1:3263679/101‑1 (MQ=255)
                                           aaaGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAg                                                          <  1:3445789/101‑1 (MQ=255)
                                            aaGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGGTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGc                                                         >  1:3456859/1‑101 (MQ=255)
                                            aaGGATGGTGCCGCTGTCTTGCCAGTCCACGGTGCCCGTGACGAA.GGCC...CGGGGGTTTGCCCCCCCCCGCCCCCGCCGGGTATTTTAGGCCAggttcaaag                                                         >  1:380226/1‑93 (MQ=255)
                                               gATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGaa                                                      <  2:2305898/101‑1 (MQ=255)
                                               gATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGaa                                                      <  2:3019807/101‑1 (MQ=255)
                                                cgggggcggatGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCCCAGGATATTTGAGGCAAGATAAAAGCGaaa                                                     >  2:603469/11‑101 (MQ=38)
                                                aTGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGGCCCCGCAGGATATTTGAGGCAAGATAAAAGCGaaa                                                     >  2:4210803/1‑101 (MQ=255)
                                                aTGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGaaa                                                     <  1:3382940/101‑1 (MQ=255)
                                                aTGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGaaa                                                     <  2:2399031/101‑1 (MQ=255)
                                                 tGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAg                                                    <  2:777927/101‑1 (MQ=255)
                                                 tGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGGTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCCAGATAAAAGCGaaaa                                                    >  1:3938562/1‑100 (MQ=255)
                                                  ggTCCCGCTGTCTTGCCAGCCCATGGTGCCCGTGACGAA.GGCC...CGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGc                                                   <  1:3980656/101‑1 (MQ=255)
                                                   gTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGcc                                                  >  2:4152343/1‑101 (MQ=255)
                                                    tGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGAC...GGGGGTTTTGCACCCCCCCGCCCCCGCAGGATATTTGGGGAGAGACAAAAGAGAAACCCg                                                 >  1:555645/1‑101 (MQ=255)
                                                      ccGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCggg                                               <  1:1102634/101‑1 (MQ=255)
                                                      ccGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCggg                                               >  2:4077088/1‑101 (MQ=255)
                                                       cGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCgggg                                              <  2:189862/101‑1 (MQ=255)
                                                          tGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGGC...GGGGGGTTTCCACCCCCGCGCCCCCTCCGGAATTTTGTAGGAAACTAAAAGCCAAAGCCAGGGCCa                                           >  1:2505915/1‑101 (MQ=255)
                                                          tGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCa                                           <  1:830395/101‑1 (MQ=255)
                                                           gTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAg                                          <  2:682750/101‑1 (MQ=255)
                                                            tCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGt                                         <  1:3177864/101‑1 (MQ=255)
                                                            tCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGGTTTGGACCCCCGGGCCCCCGCAGGATATTTTAGGCAAGATAAAAGCGAAAGCCGGGGTCAGt                                         >  2:3514052/1‑101 (MQ=255)
                                                            tCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGGTTTGCACCCCCGGGCCCCCGCAGGATATTTTGGGGAAGATAAAAGCGAAAGCCGCGGTCAgc                                         >  1:2103734/1‑100 (MQ=37)
                                                               tGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCtt                                      <  2:2865554/101‑1 (MQ=255)
                                                               tGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCtt                                      <  2:3687061/101‑1 (MQ=255)
                                                               tGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCtt                                      <  2:247322/101‑1 (MQ=255)
                                                                gCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCttt                                     <  1:1401105/101‑1 (MQ=255)
                                                                 ccAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATAGTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTc                                    <  2:723781/101‑1 (MQ=255)
                                                                  cAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGACGGGGTCAGTCTTTCa                                   <  1:2752778/101‑1 (MQ=255)
                                                                   aGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAg                                  <  2:1477179/101‑1 (MQ=255)
                                                                    gTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGt                                 <  2:234514/101‑1 (MQ=255)
                                                                      ccATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTcc                               >  1:583307/1‑101 (MQ=255)
                                                                      ccATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTcc                               <  2:1262082/101‑1 (MQ=255)
                                                                        aTGGTGCCCGTGACGAA.GGCC...GGGGGGTTTGCACCCCCGGGCCCCCGCAGGGTATTTTAGGCAAGATAAAAGCGAAAGCCGGGGGCAGGCTTTCAGTCCGt                             >  2:1077117/1‑101 (MQ=255)
                                                                           gTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCtt                          <  1:1035389/101‑1 (MQ=255)
                                                                           gTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCtt                          <  2:2561642/101‑1 (MQ=255)
                                                                            tGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTc                         <  2:583239/101‑1 (MQ=255)
                                                                             gCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTGTTCa                        >  2:2203530/1‑101 (MQ=255)
                                                                             gCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCa                        <  2:1184768/101‑1 (MQ=255)
                                                                             gCCCGTGACGAA.GGCC...GGGGGGTTTTCACCCCCCGGGCCCCCCAGGGTATTTTAGGCAAGAAAAAAAAGAAAACCCGGGGCAGTCTTTTAGTCCGTTTTCa                        >  1:4130651/1‑101 (MQ=16)
                                                                             gCCCGTGACGAA.GGCC...GGGGGGTTTGCACCCCCGGGCCCCCGCCGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGGCAGTCTTTCAGTCCGTCTTCa                        >  1:1302933/1‑101 (MQ=255)
                                                                                cGTGACGAA.GGCCG..GGGGGTTTTTACCCCCCCGGCCCCCCCGGGA.ATTTTTGGGGAAAAAAAAAAGAAAACCGGGGGGAGACTTTCAGTCCGCCTTCTTcc                     >  2:4001270/1‑101 (MQ=255)
                                                                                cGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATcc                     <  1:1160176/101‑1 (MQ=255)
                                                                                    gctaa.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGaa                 <  1:2970193/98‑1 (MQ=255)
                                                                                    aCGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGaa                 <  2:1398589/101‑1 (MQ=255)
                                                                                       aa.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCg              >  2:2698123/1‑101 (MQ=255)
                                                                                        a.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGt             <  2:3584274/101‑1 (MQ=255)
                                                                                          ggCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGTATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTg            <  1:3843246/101‑1 (MQ=255)
                                                                                          ggCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGATCAGTCTTTCAGTCCGTCTTCATCAAGAAGCGTg            >  2:3707215/1‑101 (MQ=255)
                                                                                           gCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGc           <  2:540833/101‑1 (MQ=255)
                                                                                           gCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGc           <  1:1828543/101‑1 (MQ=255)
                                                                                            cc...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCg          <  2:317297/101‑1 (MQ=255)
                                                                                            cc...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCg          <  2:46254/101‑1 (MQ=255)
                                                                                            cc...GGGGGGTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCCGAAGCGTGCg          >  2:2505057/1‑101 (MQ=255)
                                                                                             c...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCgg         <  1:429843/101‑1 (MQ=255)
                                                                                                 gggggTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGc        >  1:2703610/1‑101 (MQ=255)
                                                                                                  ggggTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGcc       >  1:3600804/1‑101 (MQ=255)
                                                                                                   gggTTTTGCCCCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGCCg      <  1:2159501/101‑1 (MQ=255)
                                                                                                     gTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGCCGTg    >  2:333269/1‑101 (MQ=255)
                                                                                                       tttGCCCCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGCCGTGcc  <  1:639669/101‑1 (MQ=255)
                                                                                                       tttGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGCCGTGcc  <  1:3069848/101‑1 (MQ=255)
                                                                                                       |                                                                                                    
AACACCTCGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCC...GGGGGTTTTGCACCCCCGGGCCCCCGCAGGATATTTGAGGCAAGATAAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGCCGTGCC  >  NC_014034/3504034‑3504233

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG