New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2185978	5 (0.020)	11 (0.050)	10/192	27.9	0.35	intergenic (+251/‑254)	mtlK/RCAP_rcc02028	mannitol 2‑dehydrogenase/FeoA family protein
	?	NC_014034	2330300 =	35 (0.150)					intergenic (+275/+37)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

GCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCCGGGG....GCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTT  >  NC_014034/2330223‑2330398                                                                                  |                                                                                                    gcATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGccccgggcc                                                                                 >  1:2942257/1‑94 (MQ=18)   aTGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGGCGAgggggcg                                                                               >  2:3969899/1‑96 (MQ=21)        gggCCCCAGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGAGGCATCGccccc                                                                          >  2:2137666/1‑98 (MQ=21)                gATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGGGCCGAGGGATCGCCCCGGCGaaaac                                                                  >  2:2640028/1‑99 (MQ=18)                   cACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGGGGCGTGGCCCCCGCGCAAACCCt                                                               >  2:2202601/1‑101 (MQ=12)                    cccGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCtt                                                              <  2:191303/100‑1 (MQ=21)                     ccGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAGCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTa                                                             <  2:2243913/101‑1 (MQ=25)                             ccGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGAc                                                     <  2:689728/101‑1 (MQ=25)                             ccGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGAc                                                     <  2:2743233/101‑1 (MQ=25)                             ccGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGGGCCGGGGCCTCGCCCCCGCGAAAACCCCTAGTAAACAc                                                     >  2:3241828/1‑101 (MQ=12)                               gggCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGAccg                                                   <  1:1435186/101‑1 (MQ=25)                                 gcggcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGCGGGGGCGCCTCCGCGGAAACCCCTTGTAAAGaacccc                                                 >  1:3392350/1‑96 (MQ=2)                                 gcggcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGAGGCAGCGCCCCGGCGAAATCCCCTAGTAAAAAacgcc                                                 >  1:4179500/1‑101 (MQ=16)                                  cggcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGTCGCCGAGGCATCTCCTCGGCGAAATCCCTTAGTAAAGAccgccc                                                <  1:3960877/101‑1 (MQ=21)                                   ggcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGGGCCCGGGCATCGCCCCCGCGAAAAACCCTCGTAAAAAacgcccc                                               >  1:3042813/1‑100 (MQ=2)                                     cTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGTCGCCGGGGCATCGCCTCGGCGAAAACCCCTTGTAAAAACCGCCcccg                                             >  2:4078441/1‑101 (MQ=12)                                      tttCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGGCCCGGCGCCCCCTCGGCCGAATCCCCTAATGAAAAacgcccgccc                                            >  2:3883915/1‑99 (MQ=2)                                      tttCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGAGGCATCGCCTCCGCGAAAAACCTCTGTAAAAAAAGCCCGCgg                                            >  2:3823067/1‑101 (MQ=9)                                        tccccgggggCCAGAGATCCCGGGGGGCGGGGGGCGGAGCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGAc                                          <  2:2942036/95‑1 (MQ=18)                                         cACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGGGGAGCCCCG.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACa                                         <  2:3254669/101‑1 (MQ=25)                                         cACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGGGGGATCGCCTCGGCGAAAACCCTTTGTTAAAACCGCCCGCGGACa                                         >  2:3000139/1‑101 (MQ=12)                                              ggggCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGAGGGATCGCCCCCGCGGAAAACCTTAGTAAAGAACGCCCGCGGACAgggga                                    >  1:2308054/1‑99 (MQ=9)                                                   cAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGTCGCCGAGGCCTCGCCCCGGCGAAAAACCCTAGGAAAAAACGCCCGCCGGCACGGCTCCgca                               >  2:1757986/1‑99 (MQ=2)                                                   cAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGAGGGATCGCCCCGGCGAAAACCCTTAGTAAAGACCGCCCGCGGGCAgggggcccca                               >  2:3484652/1‑94 (MQ=12)                                                    aaaGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAg                              <  1:1485819/101‑1 (MQ=21)                                                     aaGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGGGGGATCGCCCCCGCGGAAAACCCTAGTAAAAAACGCCCCCGGGCAAGGGGCCGCAgg                             >  1:3456122/1‑101 (MQ=0)                                                     aaGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGAGGGGTCGCCCCGGCGAAATACCCTTGTAAAAACCGCCCGCGGACAGGGGACCGAAgg                             >  2:86705/1‑101 (MQ=9)                                                      aGATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGTGCCGAGGCCTCGCCTCCGCGAAAACCCCTCGTAAAGAACCCCCCCGGGCAGGGAGCCGaaagg                            >  1:2033442/1‑98 (MQ=2)                                                       gATCCCGGGGGTCCGGGGGCGGAGCCCCC.GGCGGGGCGCCGAGGGATCGCCCCGGCGAAAACCCCTAGTAAAAAACCCCCCCGGACAGGGATCCGAAgggc                           >  1:662947/1‑99 (MQ=9)                                                                    gggggg....gCCCCCGGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCa           <  1:682636/99‑1 (MQ=255)                                                                    cgggggcggagCCCCC.GGCGGGTCGCCGAGGCATCGCCCCGGCGAAAACCCTTAGTAAAAACCGCCCGCGGGCAGGGATCCGAAGGGCGCCCTCTTCGGGa              >  1:3381157/11‑101 (MQ=25)                                                                     gggggcggagCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGAt             <  1:1313932/92‑1 (MQ=255)                                                                      ggggcggagCCCCC.GGCGGGGCGCCGAGGCATCGCCCCCGCGAAATCCCCTAGTAAAGACCCCCCCCGGACAGGGATCCGAAGGGCGCCTTCTTCGGGGTc            >  2:4225383/9‑101 (MQ=25)                                                                        ggcggagCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCAc          <  1:1408444/95‑1 (MQ=255)                                                                           ggagCCCCC.GGCGGGTCGCCGAGGGATCCCCCCCGCGAAAAACCTTAGTAAAAAACGCCCGCGGACAGGGGTCCGAAGGTCGCCTTCTTCTGGATCAcccc       >  2:83369/4‑100 (MQ=255)                                                                             cgCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCt     <  2:1218477/100‑1 (MQ=255)                                                                               ccccc.GGCGGGTCGCCGAGGCATCGCCCCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCCGGATCACCCGCTGt   >  2:2720050/1‑101 (MQ=255)                                                                                cccc.TGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGtt  <  1:2607697/101‑1 (MQ=255)                                                                                  |                                                                                                    GCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCCGGGG....GCCCCC.GGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTT  >  NC_014034/2330223‑2330398 Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG