New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2188419 =	147 (0.680)	11 (0.050)	5/192	32.1	0.11	intergenic (+80/+148)	feoB2/allA	ferrous iron transport protein B/ureidoglycolate hydrolase
	?	NC_014034	2747882 =	25 (0.110)					intergenic (‑214/+79)	RCAP_rcc02553/RCAP_rcc02554	hypothetical protein/NmrA family protein
Rejected: Position hash score below cutoff.

CGCCCGGCCC.GCGGCCGAGAAGCGCCCGCC.GG..CCGGCTGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGC  >  NC_014034/2747840‑2747979                                               |                                                                                                  cgcCCGGCCCGGCGGGCGAGAAGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGc                                           >  2:4142135/1‑101 (MQ=18)  gcccggcccgGCGGGCGAGAAGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCg                                          >  1:490430/1‑101 (MQ=18)    ccggcccgGCGGGCGAGAAGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGAt                                        >  1:1645388/1‑101 (MQ=18)      ggcccgGCGGGCGAGAAGCGCCCGCC.GGGACCGGC.GCTGCCCGAGGGCCTTTGGGCCCTCGGGGGGCGCAGGCCCTCTGTGACGCATGGCCAAGGCGATgg                                      >  1:3661614/1‑101 (MQ=18)        cccggcgGGCGAGAAGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGcc                                    >  2:1361967/5‑101 (MQ=18)         ccggcgGGCGAGAAGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCACGGCGATGGCCt                                   >  2:3374190/4‑101 (MQ=18)             cgGGCGAGAAGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGCTGGCCTTGGc                               >  2:1885540/1‑101 (MQ=21)              ggggggggaGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGcc                              <  1:4194455/93‑1 (MQ=21)              gggcGAGAAGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGcc                              >  2:1409004/4‑101 (MQ=21)              gggcGAGAAGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGcc                              >  1:119572/4‑101 (MQ=21)               ggcGAGAAGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCa                             >  1:3600466/3‑101 (MQ=21)               ggcGAGAAGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCa                             >  2:1498111/3‑101 (MQ=21)                  gagaAGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAgg                          >  1:198/1‑101 (MQ=21)                  gagaAGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAgg                          >  1:475572/1‑101 (MQ=21)                   agaAGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGt                         >  2:4325000/1‑101 (MQ=21)                   agaAGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGt                         >  1:2458491/1‑101 (MQ=21)                   agaAGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGt                         >  1:3026178/1‑101 (MQ=21)                   agaAGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGt                         >  1:3857312/1‑101 (MQ=21)                    gaAGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTc                        >  2:4235120/1‑101 (MQ=21)                    gaAGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTc                        >  2:376633/1‑101 (MQ=21)                    gaAGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGGCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAggcg                        >  2:2084552/1‑99 (MQ=21)                     aaGCGCCCGCCGGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCa                       >  2:430159/1‑101 (MQ=21)                         gcccgccgGG..CCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCATAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTc                   >  1:1958903/1‑101 (MQ=18)                            cgccggg..ccgggCGCTGCCCGCGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCAtc                >  2:4265707/6‑100 (MQ=21)                             gccggg..ccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGc               >  2:2317795/5‑101 (MQ=255)                              ccggg..ccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGcc              >  1:3307349/4‑101 (MQ=255)                                ggg..ccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACTCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAg            >  1:323647/2‑101 (MQ=255)                                     ccgggcgctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAgcac         >  2:4347669/7‑99 (MQ=255)                                      cgggcgctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGcgcc        >  2:3224089/6‑101 (MQ=255)                                      cgggcgctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGcgcc        >  2:3015479/6‑101 (MQ=255)                                      cgggcgctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGcgcc        >  2:1815539/6‑101 (MQ=255)                                       ggtcgctgcCCGAGTGCCTTTGGGCCCGCGGGGGTCACAGGACGTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGcgccg       <  2:3973092/97‑1 (MQ=37)                                       gggcgctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGcgccg       >  2:3384346/5‑101 (MQ=255)                                        ggcgctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGcgccgc      >  1:2180188/4‑101 (MQ=255)                                         gcgctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCCGCTCATGCCAGCgccgcc     >  2:1628563/3‑101 (MQ=255)                                            ctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGccgcccgc  >  2:3367328/1‑101 (MQ=255)                                               |                                                                                                  CGCCCGGCCC.GCGGCCGAGAAGCGCCCGCC.GG..CCGGCTGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGC  >  NC_014034/2747840‑2747979 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG