New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 3489427252 (1.160)2 (0.010) 2/192 35.5 0.02 coding (216/1515 nt) betC choline‑sulfatase
?NC_014034 = 3573592 10 (0.040)coding (28/3009 nt) RCAP_rcc03378 CDA peptide synthetase III
Rejected: Position hash score below cutoff.

TGACCGCCATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTGCGACCGCG  >  NC_014034/3573492‑3573600
                                                                                                    |        
tggccGCCATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTg          >  1:2554318/4‑101 (MQ=37)
tGACCGCCATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTg          <  2:3795121/101‑1 (MQ=40)
tGACCGCCATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTg          <  1:1550250/101‑1 (MQ=40)
tGACCGCCATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTg          <  2:303703/101‑1 (MQ=40)
tGACCGCCATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTg          <  2:1099920/101‑1 (MQ=40)
 gcccGCCATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTGc         <  2:1622658/99‑1 (MQ=37)
 gACCGCCATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTGc         <  2:3272791/101‑1 (MQ=39)
  aCCGCCATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTGCg        <  2:1688542/101‑1 (MQ=38)
  aCCGCCATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTGCg        <  2:1271175/101‑1 (MQ=38)
   ccGCCATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTGCGa       <  2:3004584/101‑1 (MQ=37)
   ccGCCATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTGCGa       <  1:1158185/101‑1 (MQ=37)
    cGCCATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAGCCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTGCGAc      <  2:1044453/101‑1 (MQ=25)
    cGCCATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTGCGAc      <  2:4345789/101‑1 (MQ=35)
     gCCATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTGCGAcc     >  1:1633533/1‑101 (MQ=34)
     gCCATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTGCGAcc     <  2:755738/101‑1 (MQ=34)
      ccATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTGCGACcg    <  2:2189999/101‑1 (MQ=33)
      ccATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTGCGACcg    >  2:2852453/1‑101 (MQ=33)
      ccATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTGCGACcg    <  1:809697/101‑1 (MQ=33)
      ccATGGGCGGATCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTTGCATCGGGTTTGCGACcg    >  2:2963580/1‑101 (MQ=16)
       cATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTGCGACcgc   >  2:2304136/1‑101 (MQ=32)
       cATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTGCGACcgc   <  1:4005952/101‑1 (MQ=32)
        aTGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTGCGACcgcg  >  2:1190755/1‑101 (MQ=31)
        aTGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTGCGACcgcg  >  2:1145535/1‑101 (MQ=31)
                                                                                                    |        
TGACCGCCATGGGCGGCTCTCGCTGATCGTTCCGGGGCGCCACAACCTGCGCAATGCGCTGGCCGCCCTCGGAATGGCGCTGACCCTTGGCATCGGGTTTGCGACCGCG  >  NC_014034/3573492‑3573600

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 28 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG