New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 974307	1 (0.010)	10 (0.050)	3/170	32.0	0.29	intergenic (+187/+72)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
	?	NC_014034	= 3329507	49 (0.220)					intergenic (‑42/+27)	argF/argD	ornithine carbamoyltransferase/acetylornithine aminotransferase
Rejected: Position hash score below cutoff.

GATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATGTCGTCTTCGG  >  NC_014034/3329409‑3329607                                                                                                    |                                                                                                     gATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGAccc                                                                                                    <  2:2925918/101‑1 (MQ=255) gATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGAccc                                                                                                    <  1:2251362/101‑1 (MQ=255)  atcatcGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGAcccc                                                                                                   <  1:1329228/101‑1 (MQ=255)  agaatcGAGCGCAGATCTGCCGGGCTGGTTGTGTTGATGTCAAGAAAAAGGGTGATGTCGGTTTCCTTGCCGAGC.GGCCGGGCGCTCTGCCCCCGGAcccc                                                                                                   <  2:733099/98‑1 (MQ=255)   tcatcGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGAccccc                                                                                                  <  2:173581/101‑1 (MQ=255)   tcatcGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGAccccc                                                                                                  <  2:650595/101‑1 (MQ=255)        gAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGACCCCCGGGat                                                                                             <  2:1226013/101‑1 (MQ=255)         aGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCCGGGGGTCTGGCCCCCGACCCCCGGGgta                                                                                            >  2:4352851/1‑101 (MQ=255)          gcgcAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGACCCCCGGGatat                                                                                           <  2:3283442/101‑1 (MQ=255)           cgcAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGACCCCCGGGATAtt                                                                                          <  2:840777/101‑1 (MQ=255)           cgcAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGACCCCCGGGATAtt                                                                                          <  1:2145555/101‑1 (MQ=255)                 tCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGGGCGGGGGGGCCCGCCCCCGCCCCCCCgggggttttgggg                                                                                     >  1:3695481/1‑91 (MQ=255)                  cGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGTGGCa                                                                                   <  2:2589048/101‑1 (MQ=255)                    gCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGGGCTGCCCCCCGGCCCCCCGGGTATTTTTgggcag                                                                                 >  1:680098/1‑97 (MQ=255)                      cGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGTGGCAAGAt                                                                               <  2:4025489/101‑1 (MQ=255)                       gggCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGTGGCAAGATa                                                                              <  1:1468106/101‑1 (MQ=255)                       gggCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGTGGCAAGATa                                                                              <  2:1307353/101‑1 (MQ=255)                       gggCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGTGGCAAGATa                                                                              <  1:2304388/101‑1 (MQ=255)                          cTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAAt                                                                           <  2:3835104/101‑1 (MQ=255)                           tggtggTGTGGATGTCAAGAAATTGGGTCATGTCGGTTTCCTTGCTGAGC.GGCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATc                                                                          <  2:739861/101‑1 (MQ=255)                             gtggtgTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAg                                                                        <  2:4234292/101‑1 (MQ=255)                             gtggtgTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAg                                                                        <  2:2714258/101‑1 (MQ=255)                               ggtgTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGGTCTTTCCCCGGGCCCCCCGGGGAGTTGTGGCGAGATAAAACAAGc                                                                      >  1:1455109/1‑101 (MQ=255)                                   tgGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGCCCCCCCGGGGATTTTTGGGACGACAAACAAGGGCggg                                                                  >  2:3710372/1‑100 (MQ=255)                                                  tGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGGTCTGCCCCCCGGCCCCCCGGACATTTTTGGGAAGGAAAATCAGGGCGGGTGGGGTTCGGGCggg                                                   >  2:3997701/1‑99 (MQ=255)                                                  tGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGaa                                                   <  1:2900468/101‑1 (MQ=255)                                                        aTGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAgcggcg                                             <  2:2536022/101‑1 (MQ=255)                                                            cGGTTTCCTTGCCGAGC.GGCCGGGGGGTCTGCCCCCCGACCCCCCGGGTATTTTTGGCAAGATAAATCAGGCCGGGTGGGGTTCGAGCGAAGcgggggggg                                         >  1:484458/1‑101 (MQ=255)                                                                     tGCCGAGC.GGCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAggc                                <  2:424659/101‑1 (MQ=255)                                                                      gCCGAGC.GGCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAggcg                               <  2:3224292/101‑1 (MQ=255)                                                                       ccGAGC.GGCCGGGGGGGCTGCCCCCCGGCCCCCCGGGGGTTTGTGGCAAGATAAAACAAGCCGGGTGGGGTTTGAGCGGAGGggggggggcggcaacgagg                              >  2:662162/1‑91 (MQ=255)                                                                        cGAGC.GGCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAggcggc                             <  2:484406/101‑1 (MQ=255)                                                                          cgC.GGCCGGGGGCTCTGCCCCCGGCCCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGcggcgg                           <  1:3710625/100‑1 (MQ=255)                                                                              ggCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGGATCAAGGCGGCGGACg                        >  1:3539979/1‑101 (MQ=255)                                                                              ggCCGGGGGCTCTGCCCCCCGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGGGCGAAGGGGCGGGGGCGTCAAGGGGGCGGaag                        >  1:437481/1‑99 (MQ=25)                                                                                  gggggGTCTGCCCCCGGACCCCCGGGGTATTTGTGGCAAGATAAATCAGGCCGGGTGGGGTTCGAGCGAAGCGGCGGGGGCATCAAGGGGGGGGGCGGccc                    >  2:3739146/1‑100 (MQ=25)                                                                                  gggggCTCTGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCt                    >  1:1341794/1‑101 (MQ=255)                                                                                     ggCTCTGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCgg                 >  1:2991921/1‑101 (MQ=255)                                                                                        tctGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCa              >  1:3047488/1‑101 (MQ=255)                                                                                        tctGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCa              >  1:2666537/1‑101 (MQ=255)                                                                                        tctGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCa              >  2:2137063/1‑101 (MQ=255)                                                                                         ctGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCAt             >  2:549199/1‑101 (MQ=255)                                                                                         ctGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCAt             >  2:3922026/1‑101 (MQ=255)                                                                                         ctGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCAt             >  1:2220727/1‑101 (MQ=255)                                                                                         ccgatctcGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCAt             <  2:720970/94‑1 (MQ=255)                                                                                          tGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATg            >  1:20911/1‑101 (MQ=255)                                                                                           gCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATgt           >  1:585765/1‑101 (MQ=255)                                                                                           gCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATgt           >  1:3482546/1‑101 (MQ=255)                                                                                            cccccGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATgtc          >  2:4168660/1‑101 (MQ=255)                                                                                             ccccGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATgtcg         >  2:3723411/1‑101 (MQ=255)                                                                                             ccccGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATgtcg         >  2:2248483/1‑101 (MQ=255)                                                                                                cGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCAttgatcgg      >  1:721050/1‑94 (MQ=255)                                                                                                 ggACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATGTCGTCtt     >  2:3297722/1‑101 (MQ=255)                                                                                                 ggACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATGTCGTCtt     <  1:629856/101‑1 (MQ=255)                                                                                                 ggACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATGTCGTCtt     >  1:2133061/1‑101 (MQ=255)                                                                                                 ggACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATGTCGTCtt     >  1:2107768/1‑101 (MQ=255)                                                                                                 ggACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATGTCGTCtt     >  1:1085709/1‑101 (MQ=255)                                                                                                 ggACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCACCAAGGCGGCGGACGGCCTCGGCCATGTCGTCtt     >  1:3827659/1‑101 (MQ=255)                                                                                                  gACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATGTCGTCTTc    >  1:3071613/1‑101 (MQ=255)                                                                                                  gACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCACGTCGTCTTc    >  2:904365/1‑101 (MQ=255)                                                                                                    cccccGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATGTCGTCTTCgg  >  1:3192720/1‑101 (MQ=255)                                                                                                    |                                                                                                     GATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCTGCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATGTCGTCTTCGG  >  NC_014034/3329409‑3329607 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG