Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	2,287,718	0	A→C	100.0%	0.2	5	intergenic (‑115/+120)	RCAP_rcc02125/acsA1	hypothetical protein/acetate‑‑CoA ligase
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (5/0):  ref base (0/0):  total (5/0)

CCGGCTTGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGC..GGGGGTTTCACACCCCCGCACCCCCGTGGCGTAGTTGCGCCAGGAAAAAGCACAG.ACTTTTGCCCGTTCACCCTGGC.GCAAATCTCCCGGG  >  NC_014034/2287634‑2287789                                                                                       |                                                                          ccGGCTTGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGC..GGGGGGTTTTCCCCCCCCCCCCCCCCCGGCgggggt                                                           >  1:2545908/1‑96 (MQ=1)    gCTTGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGCGGGGGGGTTTCACCCCCCCCCCCCCCCGGggggggttcg                                                          >  1:1181599/1‑93 (MQ=1)                                      ccGTTGCTCTTGACCCGCCCGTAGCGGC..GGGGGGTTTACCCCCCCCCCCCCCCCCCGGGGGGGTTCGCCCGGGAAAAACACCGAACTTTTCCCCGTCCAcc                      >  1:2464993/1‑101 (MQ=0)                                        gTTGCTCTTGACCCGCCCGTAGCGGC..GGGGGGTTTTCACCCCCCCCCCCCCCCGGCGGGGGTGCGCCCGGGAAAAAAACAC.ACCTTTTTCCCCTCAccccc                   >  1:471638/1‑99 (MQ=0)                                                 gACCCGCCCGTAGCGGC..GGGGGGTTTACACCCCCCCCCCCCCCCGGCGGAGGTGCGCCCGGAAAAAACACAG.ACTTTTTCCCCTTCACCCCCGC.GCcaaac         >  1:3313878/1‑99 (MQ=0)                                                        ccgTAGCGGC..GGGGGGTTTACACCCCCCCCCCCCCCCGGCGGGGGTGTGGCCGGAAAAAAAACAC.ACTTTTTCCCGTTCACCCCCGCACCCAATCTCCCgg   >  2:3928484/1‑101 (MQ=0)                                                         cgTAGCGGCG.GGGGGTTTCAACCCCCCCCCCCCCCCGGGGGCGGTGGGGCCGGGAAAAAAAACAA.ACTTTTGCCCGTTCACCCCGGG.CGAAACTTCCCggg  >  2:3713932/1‑101 (MQ=0)                                                                                       |                                                                          CCGGCTTGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGC..GGGGGTTTCACACCCCCGCACCCCCGTGGCGTAGTTGCGCCAGGAAAAAGCACAG.ACTTTTGCCCGTTCACCCTGGC.GCAAATCTCCCGGG  >  NC_014034/2287634‑2287789 Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 15 ≤  ATCG  < 32 ≤  ATCG  < 40 ≤  ATCG