| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,395,871 | C→G | 20.4% | intergenic (+683/‑248) | RCAP_rcc01306 → / → RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,395,871 | 0 | C→G | 20.4% | 140.9 ‑1.5 ‑0.2 | 263 | intergenic (+683/‑248) | RCAP_rcc01306/RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (30/24): ref base (96/113): total (126/137) | ||||||||||
| Fisher's exact test strand distribution p-value = 2.24e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.66e-01 | ||||||||||
Only 100 of 283 total aligned reads displayed.
CCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTC > NC_014034/1395772‑1395971
|
ccccGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCg.ccgc.c > 1:2694950/1‑101 (MQ=255)
ccccGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCg.ccgc.c > 1:2780312/1‑101 (MQ=255)
cccGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.Ct < 2:2112091/101‑1 (MQ=255)
ccGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTa < 2:1057194/101‑1 (MQ=255)
ccGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTa < 1:1754342/101‑1 (MQ=255)
gcgGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATc < 1:3989417/101‑1 (MQ=255)
ggggggCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCg < 1:1674302/100‑1 (MQ=255)
ggggggCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCg < 2:1903981/100‑1 (MQ=255)
gggGGTGGATCGACCCCTGCGGCGTGAGTTGACAGTGATCGACGCCGTGGCCGTCGCGCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCAt < 2:4317486/101‑1 (MQ=37)
cGTGGATCGAAGCCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCg < 2:3215447/101‑1 (MQ=255)
cGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCg < 1:203238/101‑1 (MQ=255)
ggATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...Tc > 1:2097416/1‑101 (MQ=255)
aTCGAAACCTGCGGCGTGAGTTGCCAGCGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..a < 1:445703/101‑1 (MQ=255)
tCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..Ag < 2:1824931/101‑1 (MQ=255)
cGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..Agc > 1:2179254/1‑101 (MQ=255)
gAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..Agcg < 1:1131947/101‑1 (MQ=255)
aaaCCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..Agcgc > 1:3010933/1‑101 (MQ=255)
cggcgTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.g < 2:4084012/101‑1 (MQ=255)
ggcgTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.Gt < 1:116366/101‑1 (MQ=255)
ggcgTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.Gt > 1:738949/1‑101 (MQ=255)
ggcgTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.Gt < 2:2244434/101‑1 (MQ=255)
cgTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCg > 2:1446770/1‑101 (MQ=255)
cgTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCg > 2:1698917/1‑101 (MQ=255)
cgTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCg < 2:3746749/101‑1 (MQ=255)
tGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGcc > 1:818371/1‑100 (MQ=255)
gAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTc > 2:3878934/1‑101 (MQ=255)
gTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTccc > 1:871809/1‑101 (MQ=255)
tGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTccccc < 1:4399951/101‑1 (MQ=255)
aGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCcgcg < 1:4096044/101‑1 (MQ=255)
gTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCgg < 2:2606637/101‑1 (MQ=255)
aGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCg < 2:351363/101‑1 (MQ=255)
aCGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTg < 1:551929/101‑1 (MQ=255)
aCGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTg < 1:3700592/101‑1 (MQ=255)
ggcccggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC.T..GGTGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTg < 2:2948441/94‑1 (MQ=2)
ggcccggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC.T..GGTGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTg < 1:191795/94‑1 (MQ=2)
ggcccggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC.T..GGTGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTg < 1:947105/94‑1 (MQ=2)
caacctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG.G..GGC.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGAt > 1:2985572/9‑101 (MQ=9)
gcccggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC.T..GGTGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTgg > 1:4188640/7‑101 (MQ=2)
aacctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG.G..GGC.CC.TCG.CACGCCGCTCCCCCCGCGGGGGCGTGGATc > 2:3786151/8‑101 (MQ=9)
gTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCg > 2:4171661/1‑101 (MQ=255)
gTGGACGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCgaccaccg < 2:3094675/101‑8 (MQ=255)
cctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG.G..GGC.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGa < 1:2937982/96‑1 (MQ=9)
ccggcGTCGCGCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC.T..GGTGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGAt < 1:2885878/97‑1 (MQ=2)
ctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG.G..GGC.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCgca > 2:3153033/5‑99 (MQ=9)
ctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG.G..GGC.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGaa < 2:398386/97‑1 (MQ=9)
ggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC.T..GGTGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGATCg < 2:4130796/99‑1 (MQ=2)
gACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGaaa < 2:3453086/101‑1 (MQ=255)
gcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC.T..GGTGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGATCGa > 2:2832938/2‑101 (MQ=2)
ccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGCGCCAT.GAATTC.A...TC.G..AGCGCCATCGAGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGaa < 2:1374008/100‑1 (MQ=2)
aCGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc < 1:2847832/101‑1 (MQ=255)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGa < 2:1547513/101‑1 (MQ=255)
tCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG.G..GGC.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAt < 2:1115217/101‑1 (MQ=9)
cGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATg > 1:3476528/1‑101 (MQ=255)
cGCCCCCCCCGGGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGG...TCTGCTGGTGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAca < 2:2297876/101‑2 (MQ=2)
gCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGc > 2:3363969/1‑101 (MQ=255)
gCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGc < 2:710377/101‑1 (MQ=255)
gCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG.G..GGC.CC.TCG.CACGTCGCTCCCCCCGCGGGGGGCTGGATCGAAACAATGc > 2:4060624/1‑101 (MQ=9)
cTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCg > 2:2782847/1‑101 (MQ=255)
cTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG.G..GGC.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCg > 1:1513585/1‑101 (MQ=9)
cTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG.G..GGC.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCg < 2:1171247/101‑1 (MQ=9)
cTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG.G..GGC.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCg < 2:488466/101‑1 (MQ=9)
tcaccccGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG.G..GGC.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCgg > 1:1013085/4‑100 (MQ=9)
ccccGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCa < 2:818289/101‑1 (MQ=255)
cccGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG.G..GGC.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCggcgcg < 2:2376764/101‑6 (MQ=9)
ccGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC.T..GGTGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcaccccgaac > 2:3681545/1‑92 (MQ=2)
cgggggggCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATgg < 1:2455606/98‑1 (MQ=255)
cgcgGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG.G..GGC.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCggcgcggg > 1:2742254/1‑94 (MQ=2)
gcgGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG.G..GGC.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCggcgggggc > 2:3028904/1‑93 (MQ=2)
gcgGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG.G..GGC.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCggcgcgggc < 1:2605373/101‑9 (MQ=2)
cgGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG.G..GGC.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCggcgcgggcc < 1:320679/101‑10 (MQ=2)
cgGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGcc > 2:805355/1‑101 (MQ=255)
cgGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGcc < 2:2694760/101‑1 (MQ=255)
gggggCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG.G..GGC.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATCCggcgcgggcct > 2:4227241/1‑91 (MQ=2)
gggggCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCt > 1:2410882/1‑101 (MQ=255)
gggCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTAc < 2:1275696/101‑1 (MQ=255)
gggCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTAc < 1:1103834/101‑1 (MQ=255)
ggCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACg > 2:911430/1‑101 (MQ=255)
gCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGt < 2:4408423/101‑1 (MQ=255)
gTGTATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCg < 2:2305763/101‑1 (MQ=255)
tGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCgg < 1:3760600/101‑1 (MQ=255)
ggATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCggg > 1:686999/1‑101 (MQ=255)
ggATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCggg < 1:4035720/101‑1 (MQ=255)
gATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGc > 1:3282650/1‑101 (MQ=255)
cGAACCTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGt < 2:3813901/101‑1 (MQ=255)
cGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGt > 1:1407711/1‑101 (MQ=255)
cGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGt > 1:363687/1‑101 (MQ=255)
cGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGt < 1:3368731/101‑1 (MQ=255)
cGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGt < 1:308008/101‑1 (MQ=255)
gAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCC.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTg > 1:1347094/1‑101 (MQ=255)
aaaCTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTgg > 1:1253006/1‑101 (MQ=255)
cTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACt < 2:2850602/101‑1 (MQ=255)
gcg.cCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTgg < 2:2582519/101‑1 (MQ=255)
gcaccgc.cTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTgg > 1:2563201/4‑101 (MQ=255)
g.ccgc.cTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGGGTTCATGGCCTACCTCGGGCAGTGGACTGGTc > 2:2446176/1‑101 (MQ=255)
g.ccgc.cTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTc < 1:1950262/101‑1 (MQ=255)
g.ccgc.cTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTc < 1:1798864/101‑1 (MQ=255)
ccgc.cTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCg > 1:3171844/1‑101 (MQ=255)
cgc.cTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGc > 1:2222405/1‑101 (MQ=255)
gc.cTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCCTGGCCTACGTCGGGCAGCGGACTGGGCGCt > 1:2297049/1‑101 (MQ=255)
c.cTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTc < 1:188158/101‑1 (MQ=255)
|
CCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC.G..AGCGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTC > NC_014034/1395772‑1395971
Base quality scores:
ATCG
< 3 ≤
ATCG
< 18 ≤
ATCG
< 27 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|