Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_014034 1,434,387 C→A 16.2% intergenic (‑166/‑792) RCAP_rcc01334 ← / → RCAP_rcc01335 hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0140341,434,3870C→A16.2% 105.6 0.0 ‑0.0265intergenic (‑166/‑792)RCAP_rcc01334/RCAP_rcc01335hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator
Reads supporting (aligned to +/- strand):  new base (20/23):  ref base (102/119):  total (122/143)
Fisher's exact test strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.99e-01

Only 100 of 281 total aligned reads displayed.

TATATGCACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTC  >  NC_014034/1434287‑1434487
                                                                                                      |                                                                                                      
tataTGCACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTGTcc                                                                                                        >  2:4293373/1‑101 (MQ=255)
tataTGCACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTcc                                                                                                        >  1:4090678/1‑101 (MQ=255)
tataTGCACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTcc                                                                                                        <  1:1864806/101‑1 (MQ=255)
tataTGCACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTcc                                                                                                        <  2:1988112/101‑1 (MQ=255)
 atatGCACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCNNNNNCGGGGGCGTGGCTCGAAAC..GTCTccc                                                                                                       >  1:2773601/1‑100 (MQ=255)
 atatGCACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCg                                                                                                       <  2:2143887/101‑1 (MQ=255)
   atGCACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGct                                                                                                     <  2:1733309/101‑1 (MQ=255)
   atGCACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGct                                                                                                     <  2:401246/101‑1 (MQ=255)
     gCACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGctct                                                                                                   <  2:2459098/101‑1 (MQ=255)
      cACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTg                                                                                                  >  1:2700771/1‑101 (MQ=255)
         cGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCtt                                                                                               <  2:3919712/101‑1 (MQ=255)
          gCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTc                                                                                              >  1:4060108/1‑101 (MQ=255)
          gCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTc                                                                                              <  2:3594681/101‑1 (MQ=255)
           cTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCa                                                                                             <  2:2395705/101‑1 (MQ=255)
            ttACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCAc                                                                                            >  2:719398/1‑101 (MQ=255)
            ttACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCAc                                                                                            <  2:2703848/101‑1 (MQ=255)
             tACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACg                                                                                           >  1:4371777/1‑101 (MQ=255)
              aCCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACg.g                                                                                         >  2:945568/1‑101 (MQ=255)
                 gTGGATCGAAGCAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTg                                                                                     >  1:3853154/1‑101 (MQ=255)
                 gTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTg                                                                                     <  2:3018653/101‑1 (MQ=255)
                 gTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTg                                                                                     >  2:1348755/1‑101 (MQ=255)
                     aTCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTc                                                                                 <  2:4371506/101‑1 (MQ=255)
                     aTCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTc                                                                                 <  1:3004494/101‑1 (MQ=255)
                      tCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCa                                                                                >  1:4002810/1‑101 (MQ=255)
                      tCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCa                                                                                <  2:167/101‑1 (MQ=255)
                      tCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCa                                                                                >  2:2251232/1‑101 (MQ=255)
                      tCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCa                                                                                <  1:2043447/101‑1 (MQ=255)
                       cGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCaa                                                                               <  1:2580090/101‑1 (MQ=255)
                        gAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAAc                                                                              >  2:4402081/1‑101 (MQ=255)
                          aaCAGGCTGCTTTGGGCGGAACACCTCATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCt                                                                            <  1:1783265/101‑1 (MQ=255)
                           aCAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCtt                                                                           <  1:3229817/101‑1 (MQ=255)
                               gctgctTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCg                                                                       >  2:58299/1‑101 (MQ=255)
                                   ctTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTcc                                                                   <  1:2384602/101‑1 (MQ=255)
                                    tttGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTccc                                                                  >  1:3490295/1‑101 (MQ=255)
                                    tttGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGGCAACCTTGTCGCTccc                                                                  >  1:163115/1‑101 (MQ=255)
                                    tttGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTACGCTCTTCTTCACG.G.CTGCGTCAACCTTGTCGCGccc                                                                  >  2:2610329/1‑101 (MQ=255)
                                     ttGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTcccc                                                                 >  1:837354/1‑101 (MQ=255)
                                      tGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTccccc                                                                >  1:4232647/1‑101 (MQ=255)
                                       gggCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTcccccc                                                               <  2:3328091/101‑1 (MQ=255)
                                        gggggAACACCTGATCCTGCTGGGTCGGTCCCCCCGCGGGGGCGTGGATCGAAGC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCcg                                                              <  1:487255/98‑1 (MQ=255)
                                        ggCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCcg                                                              <  2:1017068/101‑1 (MQ=255)
                                           ggAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCgg                                                           >  2:2908993/1‑101 (MQ=255)
                                             aaCACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCgggg                                                         <  2:4090418/101‑1 (MQ=255)
                                                acCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCg                                                      >  2:836379/1‑101 (MQ=255)
                                                 ccTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGt                                                     <  1:3943906/101‑1 (MQ=255)
                                                   tGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTgg                                                   <  2:1288748/101‑1 (MQ=255)
                                                   ngATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGNGNGtnn                                                   >  1:334270/2‑99 (MQ=255)
                                                     aTCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGAt                                                 >  1:2914540/1‑101 (MQ=255)
                                                      tCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATc                                                <  1:2251377/101‑1 (MQ=255)
                                                      ggggctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTgg                                                   <  1:4326248/92‑1 (MQ=2)
                                                        ggctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGAt                                                 <  2:3495427/94‑1 (MQ=2)
                                                         tgctgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGaa                                             <  2:2122263/101‑1 (MQ=255)
                                                          ctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCg                                               <  1:2200877/96‑1 (MQ=2)
                                                          ctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCg                                               <  1:415222/96‑1 (MQ=2)
                                                           tatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGa                                              >  1:1451945/5‑101 (MQ=2)
                                                           ctgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAac                                           <  1:3205421/101‑1 (MQ=255)
                                                            atcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGaa                                             >  2:92064/4‑101 (MQ=2)
                                                             gggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacac                                         <  2:324305/101‑1 (MQ=255)
                                                              cgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAac                                           <  2:3394029/100‑1 (MQ=2)
                                                               gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacg                                          >  1:545337/1‑100 (MQ=2)
                                                               gTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACgg                                       <  1:928347/101‑1 (MQ=255)
                                                                tCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgc                                         >  2:1881234/1‑99 (MQ=2)
                                                                tCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGa                                      <  1:1685690/101‑1 (MQ=255)
                                                                 ctcTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAt                                     <  2:328003/99‑1 (MQ=255)
                                                                 cGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgct                                        <  1:1963134/101‑4 (MQ=2)
                                                                 cGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAt                                     <  1:694375/101‑1 (MQ=255)
                                                                  gCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctg                                       >  2:3879670/1‑97 (MQ=2)
                                                                   cTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgc                                      <  1:2454522/101‑6 (MQ=2)
                                                                   cTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctca                                      >  2:1420907/1‑96 (MQ=2)
                                                                    tCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGc                                  <  1:633948/101‑1 (MQ=255)
                                                                     ccccccGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCa                                 <  2:1808225/101‑1 (MQ=255)
                                                                      cccccGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCG.CTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgctga                                   <  1:3674730/101‑9 (MQ=2)
                                                                       ccccGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATg                               <  1:763554/101‑1 (MQ=255)
                                                                        cccGGGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATgg                              <  2:527727/101‑1 (MQ=255)
                                                                         ccGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGgc                             <  2:3745297/101‑1 (MQ=255)
                                                                         ccGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGgc                             <  2:2512499/101‑1 (MQ=255)
                                                                           gcgGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGgcgc                           >  1:112119/1‑101 (MQ=255)
                                                                            cgGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGcc                          <  2:3516399/101‑1 (MQ=255)
                                                                            cgGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGcc                          >  2:3102553/1‑101 (MQ=255)
                                                                              ggggCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGa                        <  2:1616658/101‑1 (MQ=255)
                                                                               gggCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAGCACGGATTGCATGGCGCCGAg                       <  1:3292247/101‑1 (MQ=255)
                                                                               gggCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAg                       >  1:830453/1‑101 (MQ=255)
                                                                                  cGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGa                    >  1:2171886/1‑101 (MQ=255)
                                                                                  cGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGa                    <  1:1063245/101‑1 (MQ=255)
                                                                                  cGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGa                    >  1:1287111/1‑101 (MQ=255)
                                                                                   gTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGAc                   >  1:2618805/1‑101 (MQ=255)
                                                                                   gTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGAc                   <  2:1205490/101‑1 (MQ=255)
                                                                                    tctaTCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACa                  <  1:3405536/98‑1 (MQ=255)
                                                                                         cGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCtt             >  2:677295/1‑101 (MQ=255)
                                                                                         cGAAAC..CGCCCCGGTCTTGTTCCCG.GCCTGCGCCACCCTTGT.GCCCCCCCCCGGGGGGGGGGGGTCGAAACCCGGATTGCATGGCGCCGAGGGACAGGCtt             <  1:1929593/101‑1 (MQ=2)
                                                                                          gAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCttt            >  2:3166258/1‑101 (MQ=255)
                                                                                           aaaC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCtttc           >  1:3135624/1‑100 (MQ=255)
                                                                                           aaaC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTg           >  1:102042/1‑101 (MQ=255)
                                                                                           aaaC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTg           <  2:111768/101‑1 (MQ=255)
                                                                                            aaC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGc          <  2:1945817/101‑1 (MQ=255)
                                                                                                 gTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGt       >  2:4259189/1‑101 (MQ=255)
                                                                                                   ctcCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCg     <  2:2935751/101‑1 (MQ=255)
                                                                                                    tcCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGc    >  1:1628774/1‑101 (MQ=255)
                                                                                                    tcCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGc    <  2:3982601/101‑1 (MQ=255)
                                                                                                      cGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAAGGACAGGCTTTGCAGTCGCTc  <  1:2538832/101‑1 (MQ=255)
                                                                                                      |                                                                                                      
TATATGCACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.G.CTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTC  >  NC_014034/1434287‑1434487

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG