Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_014034 | 774,585 | C→G | 33.2% | intergenic (‑39/+81) | oppB1 ← / ← oppA1 | oligopeptide ABC transporter permease OppB/oligopeptide ABC transporter periplasmic oligopeptide‑binding protein OppA |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | NC_014034 | 774,585 | 0 | C→G | 33.2% | 3.6 0.0 0.0 | 15 | intergenic (‑39/+81) | oppB1/oppA1 | oligopeptide ABC transporter permease OppB/oligopeptide ABC transporter periplasmic oligopeptide‑binding protein OppA |
Reads supporting (aligned to +/- strand): new base (0/5): ref base (1/9): total (1/14) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AGAGAAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGGCGCCGGGCCGCAGCGCCCCC > NC_014034/774485‑774612
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agagAAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGc < 1:3341719/101‑1 (MQ=255)
gagaAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCg < 2:1268014/101‑1 (MQ=255)
agaAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCgg < 1:1669813/101‑1 (MQ=255)
gaAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCggg < 1:1281927/101‑1 (MQ=255)
aaaTGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCgggg > 2:2567105/1‑101 (MQ=255)
aaTGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCggggg < 1:2567268/101‑1 (MQ=255)
tCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGgcgc < 2:3911796/101‑1 (MQ=255)
agagcctgcGGGAGCGCAATCAGTAATCGTCGCATCTTATGCGGGACCATCGGCGCCGCGGCTCGTCTCTCTTTCCTTGGGGGGGGGGGGGGGGGGCGCCg < 2:3026187/93‑1 (MQ=255)
aGCGTCGGGATCGCAATCAGCAATCGCCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGGCGCCGGGc < 1:1360819/101‑1 (MQ=255)
gCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGGCGCCGGGcc < 2:4361091/101‑1 (MQ=255)
ggtggggACCGAAAGCAGCAAGCGCCGCATCGTAGACGGGACCGCGGCCGCCGCGGCTCGTCTCTTTTCCCTGGGGGGGGGGGGGGGGGGGCGCCGGGCCg < 2:3809663/97‑1 (MQ=255)
ggggacccaaaTCAGCAATCGTCGCATCGTTTACGGGACCATGGGCGCCTCGGCTCGTCTCTTTTTCCTGGGGGGGGGGGGGGGGGGGCGCCGGGCCGCAg < 1:3922127/92‑1 (MQ=255)
aTCGCAATCAGCAATCGTCCCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGGCGCCGGGCCGCAggccc < 2:4206393/101‑5 (MQ=255)
tCGAAATCAGCAATCGTCGCATCGTATACTGGAACACCGGCGCCTCGGCTCGTCTCTTTTTCCTTCGGGGGGTGGGGGGGGGGCGCCGGGCCGCAggcccg < 1:1306803/101‑6 (MQ=255)
gCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTGGGGGGGTGGGGGGGGGGCGCCGGGCCGCAggcccggc < 2:2870554/101‑8 (MQ=255)
gCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTGGGGGGGTGGCGGGGGGGCGCCGGGCCGCAggcccggc < 2:736464/101‑8 (MQ=255)
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AGAGAAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGGCGCCGGGCCGCAGCGCCCCC > NC_014034/774485‑774612
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 40 ≤
ATCG
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