Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_014034 774,585 C→G 33.2% intergenic (‑39/+81) oppB1 ← / ← oppA1 oligopeptide ABC transporter permease OppB/oligopeptide ABC transporter periplasmic oligopeptide‑binding protein OppA

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_014034774,5850C→G33.2% 3.6 0.0 0.015intergenic (‑39/+81)oppB1/oppA1oligopeptide ABC transporter permease OppB/oligopeptide ABC transporter periplasmic oligopeptide‑binding protein OppA
Reads supporting (aligned to +/- strand):  new base (0/5):  ref base (1/9):  total (1/14)
Fisher's exact test strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00

AGAGAAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGGCGCCGGGCCGCAGCGCCCCC  >  NC_014034/774485‑774612
                                                                                                    |                           
agagAAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGc                             <  1:3341719/101‑1 (MQ=255)
 gagaAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCg                            <  2:1268014/101‑1 (MQ=255)
  agaAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCgg                           <  1:1669813/101‑1 (MQ=255)
   gaAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCggg                          <  1:1281927/101‑1 (MQ=255)
    aaaTGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCgggg                         >  2:2567105/1‑101 (MQ=255)
     aaTGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCggggg                        <  1:2567268/101‑1 (MQ=255)
          tCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGgcgc                   <  2:3911796/101‑1 (MQ=255)
            agagcctgcGGGAGCGCAATCAGTAATCGTCGCATCTTATGCGGGACCATCGGCGCCGCGGCTCGTCTCTCTTTCCTTGGGGGGGGGGGGGGGGGGCGCCg                 <  2:3026187/93‑1 (MQ=255)
               aGCGTCGGGATCGCAATCAGCAATCGCCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGGCGCCGGGc              <  1:1360819/101‑1 (MQ=255)
                gCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGGCGCCGGGcc             <  2:4361091/101‑1 (MQ=255)
                 ggtggggACCGAAAGCAGCAAGCGCCGCATCGTAGACGGGACCGCGGCCGCCGCGGCTCGTCTCTTTTCCCTGGGGGGGGGGGGGGGGGGGCGCCGGGCCg            <  2:3809663/97‑1 (MQ=255)
                    ggggacccaaaTCAGCAATCGTCGCATCGTTTACGGGACCATGGGCGCCTCGGCTCGTCTCTTTTTCCTGGGGGGGGGGGGGGGGGGGCGCCGGGCCGCAg         <  1:3922127/92‑1 (MQ=255)
                        aTCGCAATCAGCAATCGTCCCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGGCGCCGGGCCGCAggccc     <  2:4206393/101‑5 (MQ=255)
                         tCGAAATCAGCAATCGTCGCATCGTATACTGGAACACCGGCGCCTCGGCTCGTCTCTTTTTCCTTCGGGGGGTGGGGGGGGGGCGCCGGGCCGCAggcccg    <  1:1306803/101‑6 (MQ=255)
                           gCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTGGGGGGGTGGGGGGGGGGCGCCGGGCCGCAggcccggc  <  2:2870554/101‑8 (MQ=255)
                           gCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTGGGGGGGTGGCGGGGGGGCGCCGGGCCGCAggcccggc  <  2:736464/101‑8 (MQ=255)
                                                                                                    |                           
AGAGAAATGATCAGAAGCGTCGGGATCGCAATCAGCAATCGTCGCATCGTATACTGGAACATCGGCGCCTCGGCTCGTCTCTCTTTCCTTCGGGGGGTGGCGGGGGGGCGCCGGGCCGCAGCGCCCCC  >  NC_014034/774485‑774612

Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 40 ≤  ATCG