Cre01.g038400.t1.2 calreticulin 1b

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre01.g038400.t1.2 chromosome_1 calreticulin 1b CDS 5458365 5461675 + 3 310

Phytozome

Locus Genomic View Functional Annotation
Cre01.g038400.t1.2 Cre01.g038400.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
CRT2 g860.t1, Cre01.g038400.t1.1 JGI78954 30788539 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0045
motif_0045_1

motif_0045_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000048
Motif Bicluster: 
bicluster_0045
Width: 
24
Number of Sites: 
1
Consensus: 
TGGcGgtGgCGgcgGcGgnGGTGG
motif_0045_2

motif_0045_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
48
Motif Bicluster: 
bicluster_0045
Width: 
22
Number of Sites: 
1
Consensus: 
cAcCtGCacCAgCAcCCGCTgC
 0.14
bicluster_0172
motif_0172_1

motif_0172_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
2.3
Motif Bicluster: 
bicluster_0172
Width: 
15
Number of Sites: 
1
Consensus: 
AgGAAAGaagnAAaa
motif_0172_2

motif_0172_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
94000
Motif Bicluster: 
bicluster_0172
Width: 
21
Number of Sites: 
1
Consensus: 
tctGTAaTAcAtCTagGanaA
 0.14

GO Terms

GO:0005509 GO:0051082 GO:0006457 GO:0005783 -

calcium ion binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).

unfolded protein binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with an unfolded protein.

protein folding

GO Category: 
biological_process
Details: 
The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

endoplasmic reticulum

GO Category: 
cellular_component
Details: 
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI78954

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