Cre09.g389430.t1.1 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre09.g389430.t1.1 chromosome_9 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative CDS 3458193 3465158 + 6 965

Phytozome

Locus Genomic View Functional Annotation
Cre09.g389430.t1.1 Cre09.g389430.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g9641.t1, Cre02.g124450.t1.1 Not available 30781306 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0065
motif_0065_1

motif_0065_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
2
Motif Bicluster: 
bicluster_0065
Width: 
20
Number of Sites: 
1
Consensus: 
gGAnGcGGnGGCGgcGgcgG
motif_0065_2

motif_0065_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
82
Motif Bicluster: 
bicluster_0065
Width: 
15
Number of Sites: 
1
Consensus: 
GTgAGTGcATtTGCA
 0.14
bicluster_0139
motif_0139_1

motif_0139_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
9.2e-24
Motif Bicluster: 
bicluster_0139
Width: 
24
Number of Sites: 
1
Consensus: 
ACACAcaCaCACaCACacACACAC
motif_0139_2

motif_0139_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000038
Motif Bicluster: 
bicluster_0139
Width: 
21
Number of Sites: 
1
Consensus: 
ACaCaCACACAcAtACACACA
 0.18

GO Terms

GO:0000049 GO:0004812 GO:0005524 GO:0043039 GO:0005737 -

tRNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with transfer RNA.

aminoacyl-tRNA ligase activity

GO Category: 
molecular_function
Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.

ATP binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

tRNA aminoacylation

GO Category: 
biological_process
Details: 
The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules.

cytoplasm

GO Category: 
cellular_component
Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network

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