Cre01.g037700.t1.2 Fatty acid/sphingolipid desaturase

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre01.g037700.t1.2 chromosome_1 Fatty acid/sphingolipid desaturase CDS 5368063 5373836 - 5 773

Phytozome

Locus Genomic View Functional Annotation
Cre01.g037700.t1.2 Cre01.g037700.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
FAD3 g845.t1, Cre01.g037700.t1.1 Not available 30788905 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0072
motif_0072_1

motif_0072_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000002
Motif Bicluster: 
bicluster_0072
Width: 
24
Number of Sites: 
1
Consensus: 
GcGGAGGcGGaGGtgGAGGcgGcG
motif_0072_2

motif_0072_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1.4
Motif Bicluster: 
bicluster_0072
Width: 
22
Number of Sites: 
1
Consensus: 
gCCtcCaCCcTCtnCaCCAcCa
 0.14
bicluster_0099
motif_0099_1

motif_0099_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.026
Motif Bicluster: 
bicluster_0099
Width: 
21
Number of Sites: 
1
Consensus: 
tGGtGgTGGCgGnGGCgGtGG
motif_0099_2

motif_0099_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
14
Motif Bicluster: 
bicluster_0099
Width: 
15
Number of Sites: 
1
Consensus: 
atacTaTacTTTtTT
 0.15

GO Terms

GO:0020037 GO:0006629 -

heme binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.

lipid metabolic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network

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