Cre14.g629650.t1.1 high-affinity nickel-transport family protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre14.g629650.t1.1 chromosome_14 high-affinity nickel-transport family protein CDS 3278097 3283422 - 5 325

Phytozome

Locus Genomic View Functional Annotation
Cre14.g629650.t1.1 Cre14.g629650.t1.1

Help

Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g15164.t1 JGI173008 30776558 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0084
motif_0084_1

motif_0084_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.033
Motif Bicluster: 
bicluster_0084
Width: 
14
Number of Sites: 
1
Consensus: 
TaaTTGTtaTTgTT
motif_0084_2

motif_0084_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
79
Motif Bicluster: 
bicluster_0084
Width: 
15
Number of Sites: 
1
Consensus: 
GCAgCGgCAGCagcA
 0.15
bicluster_0167
motif_0167_1

motif_0167_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000042
Motif Bicluster: 
bicluster_0167
Width: 
15
Number of Sites: 
1
Consensus: 
CAGCAgCgcCGnCAG
motif_0167_2

motif_0167_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00021
Motif Bicluster: 
bicluster_0167
Width: 
21
Number of Sites: 
1
Consensus: 
GCAGcAGcaGgAGcngcaccG
 0.21

GO Terms

GO:0015087 GO:0015099 GO:0046872 GO:0006824 GO:0015675 GO:0055085 GO:0016021 -

cobalt ion transmembrane transporter activity

GO Category: 
molecular_function
Details: 
Catalysis of the transfer of cobalt (Co) ions from one side of a membrane to the other.

nickel cation transmembrane transporter activity

GO Category: 
molecular_function
Details: 
Catalysis of the transfer of nickel (Ni) cations from one side of a membrane to the other.

metal ion binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with any metal ion.

cobalt ion transport

GO Category: 
biological_process
Details: 
The directed movement of cobalt (Co) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

nickel cation transport

GO Category: 
biological_process
Details: 
The directed movement of nickel (Ni) cations into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

transmembrane transport

GO Category: 
biological_process
Details: 
The process in which a solute is transported from one side of a membrane to the other.

integral to membrane

GO Category: 
cellular_component
Details: 
Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI173008

Add comment

Log in to post comments