Cre06.g308850.t1.2 Translation initiation factor eIF3 subunit

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre06.g308850.t1.2 chromosome_6 Translation initiation factor eIF3 subunit CDS 8591565 8594550 - 2 985

Phytozome

Locus Genomic View Functional Annotation
Cre06.g308850.t1.2 Cre06.g308850.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
EIF3X g7147.t1, Cre06.g308850.t1.1 JGI170004 30778950 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0139
motif_0139_1

motif_0139_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
9.2e-24
Motif Bicluster: 
bicluster_0139
Width: 
24
Number of Sites: 
1
Consensus: 
ACACAcaCaCACaCACacACACAC
motif_0139_2

motif_0139_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000038
Motif Bicluster: 
bicluster_0139
Width: 
21
Number of Sites: 
1
Consensus: 
ACaCaCACACAcAtACACACA
 0.18
bicluster_0168
motif_0168_1

motif_0168_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
4.9
Motif Bicluster: 
bicluster_0168
Width: 
11
Number of Sites: 
1
Consensus: 
AATTcAtTTgT
motif_0168_2

motif_0168_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
67
Motif Bicluster: 
bicluster_0168
Width: 
24
Number of Sites: 
1
Consensus: 
cATCActctgtTaaGCAtTTTGcA
 0.19

GO Terms

GO:0003743 GO:0005737 GO:0005852 -

translation initiation factor activity

GO Category: 
molecular_function
Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.

cytoplasm

GO Category: 
cellular_component
Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

eukaryotic translation initiation factor 3 complex

GO Category: 
cellular_component
Details: 
A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI170004

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