Cre13.g562850.t1.2 photosystem II reaction center PSB29 protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre13.g562850.t1.2 chromosome_13 photosystem II reaction center PSB29 protein CDS 127816 131235 - 3 419

Phytozome

Locus Genomic View Functional Annotation
Cre13.g562850.t1.2 Cre13.g562850.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g13851.t1, Cre13.g562850.t1.1 JGI182653 30784232 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0142
motif_0142_1

motif_0142_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
19
Motif Bicluster: 
bicluster_0142
Width: 
14
Number of Sites: 
1
Consensus: 
CaTaCAcACatGCA
motif_0142_2

motif_0142_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
2300
Motif Bicluster: 
bicluster_0142
Width: 
15
Number of Sites: 
1
Consensus: 
AgCTGCATTTTgAcT
 0.11
bicluster_0189
motif_0189_1

motif_0189_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
31
Motif Bicluster: 
bicluster_0189
Width: 
21
Number of Sites: 
1
Consensus: 
TttacACnAaaAgaaaaagCA
motif_0189_2

motif_0189_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
87000
Motif Bicluster: 
bicluster_0189
Width: 
23
Number of Sites: 
1
Consensus: 
AGCCCCCAAcCCCCCcAAAaCgT
 0.11

GO Terms

GO:0010027 GO:0015979 GO:0009523 -

thylakoid membrane organization

GO Category: 
biological_process
Details: 
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the thylakoid membrane.

photosynthesis

GO Category: 
biological_process
Details: 
The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.

photosystem II

GO Category: 
cellular_component
Details: 
A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI182653

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