Cre12.g508000.t1.1 hydroxyproline-rich glycoprotein family protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre12.g508000.t1.1 chromosome_12 hydroxyproline-rich glycoprotein family protein CDS 2248583 2252675 + 4 092

Phytozome

Locus Genomic View Functional Annotation
Cre12.g508000.t1.1 Cre12.g508000.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
TIC40 g12396.t1 JGI183027 30792702 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0005
motif_0005_1

motif_0005_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3.9e-20
Motif Bicluster: 
bicluster_0005
Width: 
21
Number of Sites: 
1
Consensus: 
cCgcCaCCacCgCCacCnCCn
motif_0005_2

motif_0005_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0057
Motif Bicluster: 
bicluster_0005
Width: 
11
Number of Sites: 
1
Consensus: 
ACAaACAcAcA
 0.49
bicluster_0024
motif_0024_1

motif_0024_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3.4e-16
Motif Bicluster: 
bicluster_0024
Width: 
24
Number of Sites: 
1
Consensus: 
GTAaATACCAGCCCAAACTAAACC
motif_0024_2

motif_0024_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
2.2e-20
Motif Bicluster: 
bicluster_0024
Width: 
23
Number of Sites: 
1
Consensus: 
cCacCaCCacCacCAcCnCCACC
 0.17

GO Terms

GO:0005634 GO:0005737 -

nucleus

GO Category: 
cellular_component
Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

cytoplasm

GO Category: 
cellular_component
Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI183027

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