Cre01.g009350.t1.2 porphyromonas-type peptidyl-arginine deiminase family protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre01.g009350.t1.2 chromosome_1 porphyromonas-type peptidyl-arginine deiminase family protein CDS 1743156 1748134 - 4 978

Phytozome

Locus Genomic View Functional Annotation
Cre01.g009350.t1.2 Cre01.g009350.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
AIH2 g236.t1, Cre01.g009350.t1.1 JGI178381 30789624 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0096
motif_0096_1

motif_0096_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00013
Motif Bicluster: 
bicluster_0096
Width: 
21
Number of Sites: 
1
Consensus: 
GAGGCGGaGgcGGaGGcGGAG
motif_0096_2

motif_0096_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
6.1
Motif Bicluster: 
bicluster_0096
Width: 
24
Number of Sites: 
1
Consensus: 
AtAGAAatgAAAGCgAGTGtGaAT
 0.21
bicluster_0103
motif_0103_1

motif_0103_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000000058
Motif Bicluster: 
bicluster_0103
Width: 
24
Number of Sites: 
1
Consensus: 
GCaGCagCAgCAGCAcctgCAGCA
motif_0103_2

motif_0103_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
2.5
Motif Bicluster: 
bicluster_0103
Width: 
21
Number of Sites: 
1
Consensus: 
AAacncCAgtagtcTtnAaaA
 0.16

GO Terms

GO:0004668 GO:0009446 -

protein-arginine deiminase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: protein L-arginine + H2O = protein L-citrulline + NH3.

putrescine biosynthetic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane; putrescine can be synthesized from arginine or ornithine and is the metabolic precursor of spermidine and spermine.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI178381

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