Cre01.g015950.t1.2 DHBP synthase RibB-like alpha/beta domain

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre01.g015950.t1.2 chromosome_1 DHBP synthase RibB-like alpha/beta domain CDS 2686470 2690115 + 3 645

Phytozome

Locus Genomic View Functional Annotation
Cre01.g015950.t1.2 Cre01.g015950.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g380.t1, Cre01.g015950.t1.1 JGI189732 30789043 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0017
motif_0017_1

motif_0017_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000036
Motif Bicluster: 
bicluster_0017
Width: 
24
Number of Sites: 
1
Consensus: 
CaCCGCCgCcnCcaCcgCCGCcnC
motif_0017_2

motif_0017_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
47
Motif Bicluster: 
bicluster_0017
Width: 
23
Number of Sites: 
1
Consensus: 
CtgttgctGcTGcTgctggTgnt
 0.19
bicluster_0079
motif_0079_1

motif_0079_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0018
Motif Bicluster: 
bicluster_0079
Width: 
21
Number of Sites: 
1
Consensus: 
AagcTnTatgTAttTaTgaAA
motif_0079_2

motif_0079_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00028
Motif Bicluster: 
bicluster_0079
Width: 
21
Number of Sites: 
1
Consensus: 
gCtGCcGCtaCTGctGCcaCC
 0.19

GO Terms

GO:0003725 -

double-stranded RNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with double-stranded RNA.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI189732

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