Cre01.g017500.t1.2 sequence-specific DNA binding transcription factors

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre01.g017500.t1.2 chromosome_1 sequence-specific DNA binding transcription factors CDS 2879003 2882844 + 3 841

Phytozome

Locus Genomic View Functional Annotation
Cre01.g017500.t1.2 Cre01.g017500.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g414.t1, Cre01.g017500.t1.1 JGI342133 30788622 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0004
motif_0004_1

motif_0004_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
7e-35
Motif Bicluster: 
bicluster_0004
Width: 
24
Number of Sites: 
1
Consensus: 
TgCTGCtgCTgCtgcTGCtGCngC
motif_0004_2

motif_0004_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
Motif Bicluster: 
bicluster_0004
Width: 
0
Number of Sites: 
1
 0.27
bicluster_0040
motif_0040_1

motif_0040_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000073
Motif Bicluster: 
bicluster_0040
Width: 
24
Number of Sites: 
1
Consensus: 
aCaGcaaCAgcaGCAgcgGCAGca
motif_0040_2

motif_0040_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.77
Motif Bicluster: 
bicluster_0040
Width: 
23
Number of Sites: 
1
Consensus: 
GTTTgCTGaTGCgCATTcCtCAt
 0.25

GO Terms

GO:0042254 -

ribosome biogenesis

GO Category: 
biological_process
Details: 
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI342133

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