Cre01.g030850.t1.2 proteasome alpha subunit D2

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre01.g030850.t1.2 chromosome_1 proteasome alpha subunit D2 CDS 4528373 4531761 + 3 388

Phytozome

Locus Genomic View Functional Annotation
Cre01.g030850.t1.2 Cre01.g030850.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
POA4 g698.t1, Cre01.g030850.t1.1 JGI183620 30789302 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0043
motif_0043_1

motif_0043_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000000000005
Motif Bicluster: 
bicluster_0043
Width: 
24
Number of Sites: 
1
Consensus: 
AcaCAcaCAcacaCaCAcAtaaAc
motif_0043_2

motif_0043_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0000000026
Motif Bicluster: 
bicluster_0043
Width: 
20
Number of Sites: 
1
Consensus: 
GGAGgtGggGgAgGanGgGG
 0.19
bicluster_0075
motif_0075_1

motif_0075_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
4.7e-16
Motif Bicluster: 
bicluster_0075
Width: 
21
Number of Sites: 
1
Consensus: 
AgCAGCaGCagCaGCaaCAGC
motif_0075_2

motif_0075_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0000000000000095
Motif Bicluster: 
bicluster_0075
Width: 
23
Number of Sites: 
1
Consensus: 
GGtGGaGGtGGnGGaGgggGgGG
 0.23

GO Terms

GO:0004298 GO:0051603 GO:0005839 GO:0004175 GO:0006511 GO:0019773 -

threonine-type endopeptidase activity

GO Category: 
molecular_function
Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.

proteolysis involved in cellular protein catabolic process

GO Category: 
biological_process
Details: 
The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.

proteasome core complex

GO Category: 
cellular_component
Details: 
A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.

endopeptidase activity

GO Category: 
molecular_function
Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.

ubiquitin-dependent protein catabolic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.

proteasome core complex, alpha-subunit complex

GO Category: 
cellular_component
Details: 
The proteasome core subcomplex that constitutes the two outer rings of the proteasome core complex. An example of this component is found in Mus musculus.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI183620

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