Cre01.g048950.t1.2 uridine 5\'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre01.g048950.t1.2 chromosome_1 uridine 5\'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) CDS 6791405 6797138 + 5 733

Phytozome

Locus Genomic View Functional Annotation
Cre01.g048950.t1.2 Cre01.g048950.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
PYR5 g1086.t1, Cre01.g048950.t1.1 JGI116267 30789390 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0126
motif_0126_1

motif_0126_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.001
Motif Bicluster: 
bicluster_0126
Width: 
21
Number of Sites: 
1
Consensus: 
CGcTgCcGccgcTGCtgCTGc
motif_0126_2

motif_0126_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
11000
Motif Bicluster: 
bicluster_0126
Width: 
24
Number of Sites: 
1
Consensus: 
TTgTgCTcAAatCATttggaTATT
 0.10
bicluster_0157
motif_0157_1

motif_0157_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.72
Motif Bicluster: 
bicluster_0157
Width: 
24
Number of Sites: 
1
Consensus: 
TagTTCCntTtgCtTTttGttttt
motif_0157_2

motif_0157_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
20
Motif Bicluster: 
bicluster_0157
Width: 
24
Number of Sites: 
1
Consensus: 
CAgCgGcAGCAcCAGCagCAGCAG
 0.10

GO Terms

GO:0009116 GO:0004590 GO:0006207 -

nucleoside metabolic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine).

orotidine-5'-phosphate decarboxylase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: H(+) + orotidine 5'-phosphate = CO(2) + UMP.

'de novo' pyrimidine nucleobase biosynthetic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI116267

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