Cre01.g050100.t1.2 Pyridoxal-dependent decarboxylase family protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre01.g050100.t1.2 chromosome_1 Pyridoxal-dependent decarboxylase family protein CDS 6946001 6950914 - 4 913

Phytozome

Locus Genomic View Functional Annotation
Cre01.g050100.t1.2 Cre01.g050100.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
DPD1 g1108.t1, Cre01.g050100.t1.1 JGI146886 30789106 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0091
motif_0091_1

motif_0091_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00054
Motif Bicluster: 
bicluster_0091
Width: 
20
Number of Sites: 
1
Consensus: 
CaCCgCCacCnCCaCcgCCa
motif_0091_2

motif_0091_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
42
Motif Bicluster: 
bicluster_0091
Width: 
21
Number of Sites: 
1
Consensus: 
ATgAAgTAAtaCAtAtACaGC
 0.25
bicluster_0166
motif_0166_1

motif_0166_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000025
Motif Bicluster: 
bicluster_0166
Width: 
11
Number of Sites: 
1
Consensus: 
TGtGTGCaTGt
motif_0166_2

motif_0166_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.58
Motif Bicluster: 
bicluster_0166
Width: 
23
Number of Sites: 
1
Consensus: 
tttAntTTGgcCTGgTATtTaCA
 0.32

GO Terms

GO:0003824 -

catalytic activity

GO Category: 
molecular_function
Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI146886

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