Cre02.g085150.t2.1 squamosa promoter binding protein-like 7

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre02.g085150.t2.1 chromosome_2 squamosa promoter binding protein-like 7 CDS 1610919 1620454 + 9 535

Phytozome

Locus Genomic View Functional Annotation
Cre02.g085150.t2.1 Cre02.g085150.t2.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g1573.t1 Not available 30786462 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0124
motif_0124_1

motif_0124_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
8.5e-32
Motif Bicluster: 
bicluster_0124
Width: 
24
Number of Sites: 
1
Consensus: 
CGCCGCCGcCGCcGCcGCCGCCGC
motif_0124_2

motif_0124_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1.3e-25
Motif Bicluster: 
bicluster_0124
Width: 
24
Number of Sites: 
1
Consensus: 
acacaCACacaCACanAcaCaCAC
 0.27
bicluster_0196
motif_0196_1

motif_0196_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1.2e-19
Motif Bicluster: 
bicluster_0196
Width: 
21
Number of Sites: 
1
Consensus: 
tGCtgCTgCTGCtgctGCTGC
motif_0196_2

motif_0196_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000011
Motif Bicluster: 
bicluster_0196
Width: 
13
Number of Sites: 
1
Consensus: 
CACACAtgCacAC
 0.28

GO Terms

GO:0003677 GO:0005634 -

DNA binding

GO Category: 
molecular_function
Details: 
Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid).

nucleus

GO Category: 
cellular_component
Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network

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