Cre02.g117900.t1.1 RNA helicase, ATP-dependent, SK12/DOB1 protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre02.g117900.t1.1 chromosome_2 RNA helicase, ATP-dependent, SK12/DOB1 protein CDS 6694347 6703559 - 9 212

Phytozome

Locus Genomic View Functional Annotation
Cre02.g117900.t1.1 Cre02.g117900.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
HEL11, MTR4 g2446.t1 JGI206573 30785394 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0108
motif_0108_1

motif_0108_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000000000068
Motif Bicluster: 
bicluster_0108
Width: 
23
Number of Sites: 
1
Consensus: 
CTGCtGCcgcTGCTgCTGCtgCa
motif_0108_2

motif_0108_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.02
Motif Bicluster: 
bicluster_0108
Width: 
15
Number of Sites: 
1
Consensus: 
GCCAgCacCAGCAGC
 0.12
bicluster_0180
motif_0180_1

motif_0180_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
110
Motif Bicluster: 
bicluster_0180
Width: 
24
Number of Sites: 
1
Consensus: 
GcTncTGGtgnTGCcgGTgcnGnt
motif_0180_2

motif_0180_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1900
Motif Bicluster: 
bicluster_0180
Width: 
21
Number of Sites: 
1
Consensus: 
TGcATtgagAcaCgCAcACAC
 0.18

GO Terms

GO:0003676 GO:0005524 GO:0008026 GO:0004386 GO:0016818 -

nucleic acid binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with any nucleic acid.

ATP binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

ATP-dependent helicase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.

helicase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

GO Category: 
molecular_function
Details: 
Catalysis of the hydrolysis of any acid anhydride which contains phosphorus.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI206573

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