Cre03.g165750.t1.1 nuclear RNA polymerase C1

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre03.g165750.t1.1 chromosome_3 nuclear RNA polymerase C1 CDS 3248381 3265996 - 17 615

Phytozome

Locus Genomic View Functional Annotation
Cre03.g165750.t1.1 Cre03.g165750.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g3401.t1 JGI292592 30786879 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0083
motif_0083_1

motif_0083_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000011
Motif Bicluster: 
bicluster_0083
Width: 
24
Number of Sites: 
1
Consensus: 
CtcCgcCtCCAcCacCgCCtgCAG
motif_0083_2

motif_0083_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
2900
Motif Bicluster: 
bicluster_0083
Width: 
15
Number of Sites: 
1
Consensus: 
tttAAAatTcTaCaa
 0.18
bicluster_0213
motif_0213_1

motif_0213_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:17
e.value: 
55000
Motif Bicluster: 
bicluster_0213
Width: 
11
Number of Sites: 
1
Consensus: 
CtCAtatgTTa
motif_0213_2

motif_0213_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:17
e.value: 
230
Motif Bicluster: 
bicluster_0213
Width: 
24
Number of Sites: 
1
Consensus: 
GcAGCaGcgGggGCgGgAGtGGcg
 0.20

GO Terms

GO:0003677 GO:0003899 GO:0006351 -

DNA binding

GO Category: 
molecular_function
Details: 
Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid).

DNA-directed RNA polymerase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

transcription, DNA-dependent

GO Category: 
biological_process
Details: 
The cellular synthesis of RNA on a template of DNA.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI292592

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