Cre03.g175250.t1.2 squalene synthase 1

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre03.g175250.t1.2 chromosome_3 squalene synthase 1 CDS 4366665 4371490 + 4 825

Phytozome

Locus Genomic View Functional Annotation
Cre03.g175250.t1.2 Cre03.g175250.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g3618.t1, Cre03.g175250.t1.1 JGI99438 30787436 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0104
motif_0104_1

motif_0104_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
320
Motif Bicluster: 
bicluster_0104
Width: 
24
Number of Sites: 
1
Consensus: 
AGTCgATtGACacCAatttGgTaT
motif_0104_2

motif_0104_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
12
Motif Bicluster: 
bicluster_0104
Width: 
24
Number of Sites: 
1
Consensus: 
AAgTggaaGAACAgGACCGCaaAT
 0.12
bicluster_0122
motif_0122_1

motif_0122_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000000013
Motif Bicluster: 
bicluster_0122
Width: 
21
Number of Sites: 
1
Consensus: 
CTGCtGCggCTGCtgCTGCTG
motif_0122_2

motif_0122_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
Motif Bicluster: 
bicluster_0122
Width: 
0
Number of Sites: 
1
 0.15

GO Terms

GO:0016740 GO:0009058 -

transferase activity

GO Category: 
molecular_function
Details: 
Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

biosynthetic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI99438

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