Cre03.g182500.t1.2 SRP72 RNA-binding domain

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre03.g182500.t1.2 chromosome_3 SRP72 RNA-binding domain CDS 5186593 5192766 - 6 173

Phytozome

Locus Genomic View Functional Annotation
Cre03.g182500.t1.2 Cre03.g182500.t1.2

Help

Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
SRP72 g3782.t1, Cre03.g182500.t1.1 JGI154339 30787417 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0125
motif_0125_1

motif_0125_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.012
Motif Bicluster: 
bicluster_0125
Width: 
15
Number of Sites: 
1
Consensus: 
TaAAGgAGgnCAAGg
motif_0125_2

motif_0125_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
380
Motif Bicluster: 
bicluster_0125
Width: 
23
Number of Sites: 
1
Consensus: 
GCCAaTatatgAtActcAanATC
 0.16
bicluster_0201
motif_0201_1

motif_0201_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:17
e.value: 
0.25
Motif Bicluster: 
bicluster_0201
Width: 
15
Number of Sites: 
1
Consensus: 
TGntGgtGgTGGTgG
motif_0201_2

motif_0201_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:17
e.value: 
1
Motif Bicluster: 
bicluster_0201
Width: 
21
Number of Sites: 
1
Consensus: 
aTntATgAgaTttnaAtntAt
 0.18

GO Terms

GO:0008312 GO:0006614 GO:0048500 -

7S RNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP).

SRP-dependent cotranslational protein targeting to membrane

GO Category: 
biological_process
Details: 
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.

signal recognition particle

GO Category: 
cellular_component
Details: 
A complex of protein and RNA which facilitates translocation of proteins across membranes.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI154339

Add comment

Log in to post comments