Cre03.g199900.t1.2 Eukaryotic initiation factor 4E protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre03.g199900.t1.2 chromosome_3 Eukaryotic initiation factor 4E protein CDS 8209544 8211970 + 2 426

Phytozome

Locus Genomic View Functional Annotation
Cre03.g199900.t1.2 Cre03.g199900.t1.2

Help

Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
EIF4E g4329.t1, Cre03.g199900.t1.1 JGI24172 30786876 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0109
motif_0109_1

motif_0109_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3800
Motif Bicluster: 
bicluster_0109
Width: 
15
Number of Sites: 
1
Consensus: 
CntTcAcTTgcantT
motif_0109_2

motif_0109_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3900
Motif Bicluster: 
bicluster_0109
Width: 
15
Number of Sites: 
1
Consensus: 
CCagtCCcAtCaCAC
 0.15
bicluster_0168
motif_0168_1

motif_0168_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
4.9
Motif Bicluster: 
bicluster_0168
Width: 
11
Number of Sites: 
1
Consensus: 
AATTcAtTTgT
motif_0168_2

motif_0168_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
67
Motif Bicluster: 
bicluster_0168
Width: 
24
Number of Sites: 
1
Consensus: 
cATCActctgtTaaGCAtTTTGcA
 0.19

GO Terms

GO:0003723 GO:0003743 GO:0006413 GO:0005737 -

RNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

translation initiation factor activity

GO Category: 
molecular_function
Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.

translational initiation

GO Category: 
biological_process
Details: 
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.

cytoplasm

GO Category: 
cellular_component
Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI24172

Add comment

Log in to post comments