Cre04.g218700.t1.2 Nucleic acid-binding, OB-fold-like protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre04.g218700.t1.2 chromosome_4 Nucleic acid-binding, OB-fold-like protein CDS 1992611 1994062 - 1 451

Phytozome

Locus Genomic View Functional Annotation
Cre04.g218700.t1.2 Cre04.g218700.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
EIF1, INFA g4767.t1, Cre04.g218700.t1.1 JGI75266 30791022 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0084
motif_0084_1

motif_0084_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.033
Motif Bicluster: 
bicluster_0084
Width: 
14
Number of Sites: 
1
Consensus: 
TaaTTGTtaTTgTT
motif_0084_2

motif_0084_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
79
Motif Bicluster: 
bicluster_0084
Width: 
15
Number of Sites: 
1
Consensus: 
GCAgCGgCAGCagcA
 0.15
bicluster_0181
motif_0181_1

motif_0181_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
96000
Motif Bicluster: 
bicluster_0181
Width: 
14
Number of Sites: 
1
Consensus: 
TatncAAtAGtTTG
motif_0181_2

motif_0181_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
7500
Motif Bicluster: 
bicluster_0181
Width: 
15
Number of Sites: 
1
Consensus: 
CAGcAGCAgcGAGcn
 0.13

GO Terms

GO:0003723 GO:0003743 GO:0006413 -

RNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

translation initiation factor activity

GO Category: 
molecular_function
Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.

translational initiation

GO Category: 
biological_process
Details: 
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI75266

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